test: updated test for radiomicFeatureExtraction to use default pyrad…

…iomics parameter file
bhklab · Dec 19, 2023 · 617abbc · 617abbc
1 parent 84f16db
commit 617abbc
Showing 1 changed file with 8 additions and 4 deletions.
diff --git a/tests/test_feature_extraction.py b/tests/test_feature_extraction.py
@@ -77,11 +77,13 @@ def test_singleRadiomicFeatureExtraction_RTSTRUCT(lung4DCTImage, lung4DRTSTRUCTI
         "Volume feature is incorrect"
 
 
-def test_radiomicFeatureExtraction(nsclcMetadataPath, pyradiomicsParamFilePath):
+def test_radiomicFeatureExtraction(nsclcMetadataPath):
+    """Test full radiomicFeatureExtraction function with CT and SEG and default PyRadiomics 
+       parameter file and no output"""
+
     actual = radiomicFeatureExtraction(nsclcMetadataPath,
                                        imageDirPath="tests/",
-                                       roiNames = None,
-                                       pyradiomicsParamFilePath=pyradiomicsParamFilePath)
+                                       roiNames = None)
     assert type(actual) == pd.core.frame.DataFrame, \
         "Wrong return type, expect a pandas DataFrame"
     assert actual.shape[1] == 1365, \
@@ -93,4 +95,6 @@ def test_radiomicFeatureExtraction(nsclcMetadataPath, pyradiomicsParamFilePath):
     assert actual['diagnostics_Mask-original_Size'][0] == (26, 21, 20), \
         "Cropped segmentation mask is incorrect size"
     assert actual['original_shape_MeshVolume'][0].tolist()== pytest.approx(1273.7916666666667), \
-        "Volume feature is incorrect"
+        "Volume feature is incorrect"
+
+