Created testing suite for negative controls and fixed errors in image_processing.py and negative_controls.py #47
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| name: ci-cd | |
| on: [push, pull_request] | |
| jobs: | |
| ci: | |
| # Set up operating system | |
| runs-on: ubuntu-latest | |
| # Define job steps | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: Check-out repository | |
| uses: actions/checkout@v3 | |
| - name: Install poetry | |
| uses: snok/install-poetry@v1 | |
| - name: Install package | |
| run: poetry install | |
| - name: Test with pytest | |
| run: poetry run pytest tests/ --cov=yarea --cov-report=xml | |
| - name: Use Codecov to track coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml # coverage report | |
| - name: Build documentation | |
| run: poetry run make html --directory docs/ | |
| cd: | |
| # Only run this job if the "ci" job passes | |
| # needs: ci | |
| # Only run this job if new work is pushed to "main" | |
| if: github.event_name == 'push' && github.ref == 'refs/heads/main' | |
| # Set up operating system | |
| runs-on: ubuntu-latest | |
| # Define job steps | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: Check-out repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install poetry | |
| uses: snok/install-poetry@v1 | |
| - name: Install package | |
| run: poetry install | |
| # This action uses Python Semantic Release v8 | |
| - name: Python Semantic Release | |
| id: release | |
| uses: python-semantic-release/python-semantic-release@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install packaging-related tool | |
| run: | |
| python3 -m pip install build twine | |
| - name: Build package | |
| run: | | |
| poetry version $(git describe --tags --abbrev=0 | sed 's/^v//') | |
| python -m build --sdist --wheel --outdir dist/ . | |
| ls dist/ | |
| - name: Publish to TestPyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| - name: Test install from TestPyPI | |
| run: | | |
| pip install \ | |
| --index-url https://test.pypi.org/simple/ \ | |
| --extra-index-url https://pypi.org/simple \ | |
| yarea | |
| # - name: Publish to PyPI | |
| # uses: pypa/gh-action-pypi-publish@release/v1 | |
| # with: | |
| # user: __token__ | |
| # password: ${{ secrets.PYPI_API_TOKEN }} |