feat: update correlation functions to get subsections of matrix #387
Workflow file for this run
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| name: CI-CD | |
| # only run on pushes to main or pull requests | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["*"] | |
| jobs: | |
| ################################################################################################ | |
| # Unit-Tests: Run unit tests using pytest | |
| ################################################################################################ | |
| Unit-Tests: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 15 # Consider increasing timeout | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, macos-14, windows-latest] # , windows-latest removed for now | |
| env: ["py310", "py311", "py312"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Pixi | |
| uses: prefix-dev/[email protected] | |
| with: | |
| environments: ${{ matrix.env }} | |
| pixi-version: v0.39.0 | |
| cache: true | |
| - name: Run pytest | |
| run: | | |
| pixi run -e ${{ matrix.env }} test | |
| - name: Upload coverage report artifact to be used by Codecov | |
| # only upload if matrix.os is ubuntu-latest and matrix.python-version is 3.12 | |
| if: matrix.os == 'ubuntu-latest' && matrix.env == 'py312' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: coverage-report | |
| ################################################################################################ | |
| # Codecov: Run codecov to check coverage | |
| ################################################################################################ | |
| Code-Coverage: | |
| needs: Unit-Tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Download coverage.xml artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: coverage-report | |
| - name: Use Codecov to track coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage-report/coverage.xml | |
| fail_ci_if_error: true | |
| verbose: true | |
| name: codecov-umbrella | |
| ################################################################################################ | |
| # Ruff: Run ruff linter | |
| ################################################################################################ | |
| Ruff: | |
| runs-on: ubuntu-latest | |
| env: | |
| PIXI_ENV: "dev" | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Pixi | |
| uses: prefix-dev/[email protected] | |
| with: | |
| environments: ${{ env.PIXI_ENV }} | |
| pixi-version: v0.39.0 | |
| cache: true | |
| locked: false | |
| - name: Run Ruff | |
| run: pixi run qc | |
| ################################################################################################ | |
| # Semantic-Release: Run semantic-release to automate versioning and publishing | |
| ################################################################################################ | |
| Semantic-Release: | |
| permissions: | |
| # Read releases read-all | |
| contents: write | |
| packages: write | |
| issues: write | |
| pull-requests: write | |
| needs: [Unit-Tests, Ruff] | |
| # if pulling to main, deploy to PyPI | |
| if: github.ref == 'refs/heads/main' | |
| env: | |
| PIXI_ENV: "publish" | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| # Set up operating system | |
| runs-on: ${{ matrix.os }} | |
| # Concurrency is for preventing multiple runs of the same workflow | |
| concurrency: release | |
| outputs: | |
| released: ${{ steps.release.outputs.released }} | |
| version: ${{ steps.release.outputs.version }} | |
| tag: ${{ steps.release.outputs.tag }} | |
| # Define job steps | |
| steps: | |
| - name: Check-out repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install Pixi | |
| uses: prefix-dev/[email protected] | |
| env: | |
| RUNNER_DEBUG: true | |
| with: | |
| environments: ${{ env.PIXI_ENV }} | |
| pixi-version: v0.39.0 | |
| cache: true | |
| locked: false | |
| # cache-key: pixi-ENV_${{ env.PIXI_ENV }}- | |
| - name: Print Semver | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: pixi run semver | |
| - name: Run semantic-release | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| id: release | |
| run: pixi run release | |
| - name: Test Outputs of semantic release step | |
| run: | | |
| echo "${{ steps.release.outputs.released }}" | |
| echo "${{ steps.release.outputs.version }}" | |
| echo "${{ steps.release.outputs.tag }}" | |
| ############################################################################################### | |
| # Publish-To-PyPi & Test-PyPi-Installation: Publish to PyPI and test installation | |
| ############################################################################################### | |
| Publish-To-PyPi: | |
| needs: Semantic-Release | |
| env: | |
| PIXI_ENV: "publish" | |
| if: needs.Semantic-Release.outputs.released == 'true' | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout the code with tag ${{ needs.Semantic-Release.outputs.tag }} | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.Semantic-Release.outputs.tag }} | |
| - name: Install Pixi | |
| uses: prefix-dev/[email protected] | |
| with: | |
| environments: ${{ env.PIXI_ENV }} | |
| pixi-version: v0.39.0 | |
| cache: true | |
| locked: false # wont be the same because of the tag | |
| - name: Publish to PyPI | |
| env: | |
| HATCH_INDEX_USER: __token__ | |
| HATCH_INDEX_AUTH: ${{ secrets.PYPI_API_TOKEN }} | |
| HATCH_INDEX_REPO: https://upload.pypi.org/legacy/ | |
| run: | | |
| pixi run publish-pypi | |
| # Publish-To-Test-PyPi: | |
| # needs: Semantic-Release | |
| # env: | |
| # PIXI_ENV: "publish" | |
| # if: needs.Semantic-Release.outputs.released == 'true' | |
| # strategy: | |
| # matrix: | |
| # os: [ubuntu-latest] | |
| # runs-on: ${{ matrix.os }} | |
| # steps: | |
| # - name: Checkout the code with tag ${{ needs.Semantic-Release.outputs.tag }} | |
| # uses: actions/checkout@v4 | |
| # with: | |
| # ref: ${{ needs.Semantic-Release.outputs.tag }} | |
| # - name: Install Pixi | |
| # uses: prefix-dev/[email protected] | |
| # with: | |
| # environments: ${{ env.PIXI_ENV }} | |
| # pixi-version: v0.39.0 | |
| # cache: true | |
| # locked: false # wont be the same because of the tag | |
| # - name: Publish to TestPyPI | |
| # env: | |
| # HATCH_INDEX_USER: __token__ | |
| # HATCH_INDEX_AUTH: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| # run: | | |
| # pixi run -e ${{ env.PIXI_ENV }} publish-test | |
| # Test-TestPypi-Installation: | |
| # needs: [Semantic-Release, Publish-To-Test-PyPi] | |
| # strategy: | |
| # matrix: | |
| # os: [ubuntu-latest, macos-latest] | |
| # python-version: ["3.12"] | |
| # runs-on: ${{ matrix.os }} | |
| # steps: | |
| # - name: Checkout the code with tag ${{ needs.Semantic-Release.outputs.tag }} | |
| # uses: actions/checkout@v4 | |
| # with: | |
| # ref: ${{ needs.Semantic-Release.outputs.tag }} | |
| # - name: setup python ${{ matrix.python-version }} | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Install using TestPyPI | |
| # run: | | |
| # pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ readii |