Updates for CRAN checks #107
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| paths-ignore: | |
| - 'appveyor.yml' | |
| - 'developmentBuild.sh' | |
| - 'docs/**' | |
| - 'Doxyfile' | |
| - 'etc/**' | |
| - 'lhs.Rproj' | |
| - 'logo.svg' | |
| - 'pkgdown/**' | |
| - 'README.md' | |
| - 'README.Rmd' | |
| - 'refs/**' | |
| - 'SECURITY.md' | |
| - '.github/workflows/docker-builds.yml' | |
| - '.github/workflows/rev-dep-check.yaml' | |
| - '.github/workflows/rhub-check.yml' | |
| - '.github/workflows/pkgdown.yml' | |
| - '.github/workflows/build_readme.yaml' | |
| - '.github/workflows/rhub.yaml' | |
| branches: | |
| - master | |
| tags: | |
| - none | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: windows-latest, r: 'devel'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'devel'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.MY_PAT }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Setup R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Check Standard | |
| uses: r-lib/actions/check-r-package@v2 | |
| if: ( matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' ) == false | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_0_LOGIC2_: true | |
| with: | |
| args: 'c("--no-manual", "--as-cran")' | |
| - name: Install Valgrind (Linux-rdevel only) | |
| if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' | |
| run: sudo apt-get install valgrind | |
| - name: Check Valgrind (Linux-rdevel only) | |
| uses: r-lib/actions/check-r-package@v2 | |
| if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| # https://www.valgrind.org/docs/manual/manual-core.html | |
| VALGRIND_OPTS: "--leak-check=full --track-origins=yes" | |
| # https://www.stats.ox.ac.uk/pub/bdr/memtests/README.txt | |
| RJAVA_JVM_STACK_WORKAROUND: 0 | |
| R_DONT_USE_TK: true | |
| with: | |
| args: 'c("--no-manual", "--as-cran")' | |
| - name: Code Coverage | |
| if: matrix.config.os == 'windows-latest' && matrix.config.r == 'release' | |
| run: | | |
| install.packages("covr") | |
| covr::codecov(line_exclusions=list("src/COrthogonalArray.cpp", "src/COrthogonalArray.h", "src/CRandom.h", "src/RStandardUniform.h", "src/ak3.cpp", "src/akconst.cpp", "src/akn.cpp", "src/construct.cpp", "src/GaloisField.h", "src/GaloisField.cpp", "src/geneticLHS.cpp", "src/improvedLHS.cpp", "src/matrix.h", "src/maximinLHS.cpp", "src/oa.cpp", "src/oaLHS.cpp", "src/oaLHSUtility.h", "src/optSeededLHS.cpp", "src/optimumLHS.cpp", "src/order.h", "src/primes.cpp", "src/randomLHS.cpp", "src/runif.cpp", "src/runif.h", "src/rutils.cpp", "src/rutils.h", "src/utilityLHS.cpp", "src/utilityLHS.h", "src/xtn.h", "src/bclibVersion.h", "src/oalibVersion.h", "src/lhslibVersion.h", "src/OACommonDefines.h")) | |
| shell: Rscript {0} |