added attributes to the output object of fastSP and fastSP.K, and imp… #190
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| name: R-CMD-check | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'README.md' | |
| - 'README.Rmd' | |
| - '_pkgdown.yml' | |
| - 'SOAs.Rproj' | |
| - '.github/workflows/build_readme.yml' | |
| - '.github/workflows/pkgdown.yaml' | |
| branches: [ main ] | |
| tags: none | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: windows-latest, r: 'devel'} | |
| #- {os: macOS-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'devel'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel'} | |
| steps: | |
| - name: Check out SOAs | |
| uses: actions/checkout@v3 | |
| - name: Set up R ${{ matrix.config.r }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Linux System Dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev | |
| - name: Install R build Dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck")) | |
| shell: Rscript {0} | |
| - name: Install SOAs dependencies | |
| run: | | |
| remotes::install_deps(pkgdir = ".", dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| if: ( matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' ) == false | |
| run: rcmdcheck::rcmdcheck(".", args = c("--as-cran", "--no-manual"), error_on = "warning") | |
| shell: Rscript {0} | |
| - name: Code Coverage | |
| if: matrix.config.os == 'windows-latest' && matrix.config.r == 'release' | |
| # run code coverage, excluding functions that will be removed. | |
| run: | | |
| install.packages("covr") | |
| covr::codecov(function_exclusions = c("OSOAregulart","OSOApb","permopt","BsFromB")) | |
| shell: Rscript {0} | |
| - name: Install Valgrind (Linux-rdevel only) | |
| if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' | |
| run: sudo apt-get install valgrind | |
| - name: Check Valgrind (Linux-rdevel only) | |
| if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| # https://www.valgrind.org/docs/manual/manual-core.html | |
| VALGRIND_OPTS: "--leak-check=full --track-origins=yes" | |
| # https://www.stats.ox.ac.uk/pub/bdr/memtests/README.txt | |
| RJAVA_JVM_STACK_WORKAROUND: 0 | |
| R_DONT_USE_TK: true | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--use-valgrind"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} |