Circuit extensions #29
Workflow file for this run
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| name: Build Singularity Container | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| paths: | |
| - 'resources/retinal-rl.def' | |
| workflow_call: | |
| inputs: | |
| deploy: | |
| type: boolean | |
| required: false | |
| default: true | |
| workflow_dispatch: | |
| inputs: | |
| deploy: | |
| type: boolean | |
| required: false | |
| default: true | |
| env: | |
| singularity_image: oras://ghcr.io/berenslab/retinal-rl:singularity-image | |
| sif_file: retinal-rl_singularity-image.sif | |
| jobs: | |
| singularity-build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Fetch all branches | |
| run: git fetch --all | |
| - uses: eWaterCycle/setup-apptainer@v2 | |
| with: | |
| apptainer-version: 1.3.0 | |
| - name: Evaluate whether build should be deployed | |
| id: setup | |
| run: | | |
| if [[ "${{ inputs.deploy }}" != "" ]]; then | |
| echo "deploy=${{ inputs.deploy }}" >> $GITHUB_OUTPUT | |
| else | |
| echo "deploy=false" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Cache Singularity Image | |
| id: cache-singularity | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.sif_file }} | |
| key: ${{ runner.os }}-singularity-${{ hashFiles('~/resources/retinal-rl.def') }} | |
| restore-keys: | | |
| ${{ runner.os }}-singularity-${{ hashFiles('~/resources/retinal-rl.def') }} | |
| - name: Build Singularity container | |
| if: steps.cache-singularity.outputs.cache-hit != 'true' | |
| run: apptainer build ${{ env.sif_file }} resources/retinal-rl.def | |
| - name: Scan configs | |
| run: | | |
| bash tests/ci/copy_configs.sh ${{ env.sif_file }} | |
| bash tests/ci/scan_configs.sh ${{ env.sif_file }} | |
| - name: Run code check | |
| run: bash tests/ci/pylint.sh ${{ env.sif_file }} | |
| - name: Deployment / Push to ghcr.io | |
| if: steps.setup.outputs.deploy == 'true' | |
| run: | | |
| apptainer registry login --username ${{ github.actor }} --password ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io | |
| apptainer push ${{ env.sif_file }} oras://ghcr.io/berenslab/retinal-rl:singularity-image |