back to 'new' def file, switch to ubuntu docker container #14
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build Singularity Container | |
| on: | |
| schedule: | |
| - cron: '0 2 1 * *' | |
| push: | |
| branches-ignore: | |
| - master | |
| paths: | |
| - 'resources/retinal-rl.def' | |
| pull_request: | |
| branches: | |
| - master | |
| paths: | |
| - 'resources/retinal-rl.def' | |
| jobs: | |
| singularity-build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: eWaterCycle/setup-apptainer@v2 | |
| with: | |
| apptainer-version: 1.3.0 | |
| - name: Build Singularity container | |
| run: apptainer build retinal-rl.sif resources/retinal-rl.def | |
| - name: Scan classification config / ensure minimal functionality | |
| run: | | |
| cp -r resources/config_templates/* config/ | |
| singularity exec retinal-rl.sif python main.py -m +experiment=cifar10-class-recon command=scan system.device=cpu | |
| - name: Push to ghcr.io | |
| run: | | |
| singularity registry login --username ${{ github.actor }} --password ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io | |
| singularity push retinal-rl.sif oras://ghcr.io/berenslab/retinal-rl:singularity-image-latest |