Feature more image transforms #15

	name: Scan Configs
	on: [pull_request,workflow_dispatch]

	env:
	singularity_image: oras://ghcr.io/berenslab/retinal-rl:singularity-image-latest
	sif_file: retinal-rl_singularity-image-latest.sif

	jobs:
	scan:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Setup Apptainer
	uses: eWaterCycle/setup-apptainer@v2
	with:
	apptainer-version: 1.3.0
	- name: Cache Singularity Image
	id: cache-singularity
	uses: actions/cache@v3
	with:
	path: ${{ env.sif_file }}
	key: ${{ runner.os }}-singularity-${{ hashFiles('~/resources/retinal-rl.def') }}
	restore-keys: \|
	${{ runner.os }}-singularity-${{ hashFiles('~/resources/retinal-rl.def') }}
	${{ runner.os }}-singularity-
	- name: Pull Singularity container
	if: steps.cache-singularity.outputs.cache-hit != 'true'
	run: \|
	singularity registry login --username ${{ github.actor }} --password ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io
	singularity pull ${{ env.sif_file }} ${{ env.singularity_image }}

	- name: Prepare experiment files
	run: \|
	cp -r resources/config_templates/* config/
	mkdir -p experiment_list
	for file in resources/config_templates/experiments/*.yaml; do
	filename=$(basename "$file" .yaml)
	echo "$filename" >> experiment_list/experiments.txt
	done

	- name: Scan classification configs
	run: \|
	while IFS= read -r experiment; do
	singularity exec ${{ env.sif_file }} \
	python main.py +experiment="$experiment" command=scan system.device=cpu
	done < experiment_list/experiments.txt

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