Skip to content
Back to pull request #1

Refactor ext config as process inputs #1

Sign in to view logs

Refactor ext config as process inputs

Refactor ext config as process inputs #1

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Run pipeline with test data (23.04.0)
2m 22s
Run pipeline with test data (latest-everything)
2m 29s
Test STAR RSEM with workflow parameters (--skip_qc)
18s
Test HISAT2 with workflow parameters (--skip_qc)
15s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
16s
Test STAR RSEM with workflow parameters (--rsem_index false)
15s
Test HISAT2 with workflow parameters (--hisat2_index false)
20s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
18s
Test STAR Salmon with workflow parameters (--skip_qc)
14s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
21s
Test STAR Salmon with workflow parameters (--skip_trimming)
1s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
14s
Test STAR Salmon with workflow parameters (--gtf false)
14s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
17s
Test STAR Salmon with workflow parameters (--star_index false)
1s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
15s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
1s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
16s
Test STAR Salmon with workflow parameters (--with_umi)
1s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
1s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
16s
Test STAR Salmon with workflow parameters (--bam_csi_index)
20s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
14s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
18s
Test STAR Salmon with workflow parameters (--trimmer fastp)
1s
9m 38s