Merge pull request #32 from bento-platform/chore/updates

chore: update dependencies + base image

.github/workflows/build.yml

@@ -19,10 +19,10 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Run Bento build action
-        uses: bento-platform/[email protected].0
+        uses: bento-platform/[email protected].1
         with:
           registry: ghcr.io
           registry-username: ${{ github.actor }}

.github/workflows/lint.yml

@@ -8,8 +8,8 @@ jobs:
   lint:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
         name: Set up Python
         with:
           python-version: "3.10"

.github/workflows/test.yml

@@ -11,8 +11,8 @@ jobs:
       matrix:
         python-version: [ "3.10", "3.11" ]
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
         name: Set up Python
         with:
           python-version: ${{ matrix.python-version }}

Dockerfile

@@ -1,8 +1,8 @@
-FROM ghcr.io/bento-platform/bento_base_image:python-debian-2023.12.01
+FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.01.01
 
 # Use uvicorn (instead of hypercorn) in production since I've found
 # multiple benchmarks showing it to be faster - David L
-RUN pip install --no-cache-dir "uvicorn[standard]==0.24.0"
+RUN pip install --no-cache-dir "uvicorn[standard]==0.27.0"
 
 # Backwards-compatible with old BentoV2 container layout
 WORKDIR /service-registry

dev.Dockerfile

@@ -1,6 +1,6 @@
-FROM ghcr.io/bento-platform/bento_base_image:python-debian-2023.12.01
+FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.01.01
 
-RUN pip install --no-cache-dir "uvicorn[standard]==0.24.0"
+RUN pip install --no-cache-dir "uvicorn[standard]==0.27.0"
 
 # Backwards-compatible with old BentoV2 container layout
 WORKDIR /service-registry

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "bento_service_registry"
-version = "1.3.3"
+version = "1.3.4"
 description = "An implementation of GA4GH Service Registry API for the Bento platform."
 authors = ["David Lougheed <[email protected]>"]
 readme = "README.md"
@@ -21,21 +21,21 @@ classifiers = [
 python = "^3.10.0"
 aiodns = "^3.0.0"
 aiofiles = "^23.2.1"
-aiohttp = "^3.9.2"
-bento-lib = {extras = ["fastapi"], version = "^11.1.0"}
-fastapi = "^0.105.0"
-pydantic = "^2.4.0"
+aiohttp = "^3.9.3"
+bento-lib = {extras = ["fastapi"], version = "^11.4.0"}
+fastapi = "^0.109.0"
+pydantic = "^2.6.0"
 pydantic-settings = "^2.0.3"
-orjson = "^3.9.10"
+orjson = "^3.9.12"
 
 [tool.poetry.group.dev.dependencies]
 coverage = "^7.2.1"
-flake8 = "^6.0.0"
-pytest = "^7.2.0"
+debugpy = "^1.8.0"
+flake8 = "^7.0.0"
+httpx = "^0.26.0"
+mypy = "~1.8.0"
+pytest = "^7.4.4"
+pytest-asyncio = "^0.23.4"
 pytest-cov = "^4.0.0"
-tox = "^4.4.5"
-mypy = "^1.0.0"
-types-aiofiles = "^22.1.0"
-pytest-asyncio = "^0.20.1"
-debugpy = "^1.6.3"
-httpx = "^0.24.1"
+tox = "^4.12.1"
+types-aiofiles = "^23.2.0"

tox.ini

@@ -7,7 +7,7 @@ skip_install = true
 allowlist_externals =
     poetry
 commands =
-    poetry install
+    poetry install --sync
     poetry run pytest -svv --cov=bento_service_registry --cov-branch {posargs}
     poetry run flake8 ./bento_service_registry ./tests
     poetry run mypy bento_service_registry