GitHub - bensonlew/script: script for my bioinformatics

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 27 Commits
AnnotdbUpdate		AnnotdbUpdate
R-m3-test		R-m3-test
develop		develop
sg_complete		sg_complete
add_detail.py		add_detail.py
add_params.py		add_params.py
annot_file_redo.py		annot_file_redo.py
bert_server.py		bert_server.py
chart_json_compare.py		chart_json_compare.py
chart_json_convert.py		chart_json_convert.py
choose_mapped.py		choose_mapped.py
choose_unpredict.py		choose_unpredict.py
cmd_api.py		cmd_api.py
cmd_client.py		cmd_client.py
cmd_his_stat.py		cmd_his_stat.py
cmd_listener.py		cmd_listener.py
cmd_mongo_api.py		cmd_mongo_api.py
db2table.py		db2table.py
db2table2.py		db2table2.py
decode.py		decode.py
delete_demo.py		delete_demo.py
delete_list.py		delete_list.py
dendrogram2newick.py		dendrogram2newick.py
download_from_sql.py		download_from_sql.py
download_froms3.py		download_froms3.py
enrich_merge_wgcna.py		enrich_merge_wgcna.py
extract_js2json.py		extract_js2json.py
find_mongo2table.py		find_mongo2table.py
get_db_index.py		get_db_index.py
get_n_seq.py		get_n_seq.py
get_old_kegg_map2ko.py		get_old_kegg_map2ko.py
get_report_module.sh		get_report_module.sh
get_report_module_jsupdate.sh		get_report_module_jsupdate.sh
gtd_orgup.py		gtd_orgup.py
html2reportinfo.py		html2reportinfo.py
mem_release.py		mem_release.py
merge_taxnomy.py		merge_taxnomy.py
mirwalk_test.list		mirwalk_test.list
mongo2uri.py		mongo2uri.py
mongo_collection_ensureindex.py		mongo_collection_ensureindex.py
mongo_collection_relation.py		mongo_collection_relation.py
mongo_dy.py		mongo_dy.py
mongo_genome_stat.py		mongo_genome_stat.py
mongo_storage_stat.py		mongo_storage_stat.py
mongo_task_stat.py		mongo_task_stat.py
parse_tf_to_mongo.py		parse_tf_to_mongo.py
project.dev0.mongo.uri		project.dev0.mongo.uri
project.dev1.mongo.uri		project.dev1.mongo.uri
project.sanger0.mongo.uri		project.sanger0.mongo.uri
project.sanger1.mongo.uri		project.sanger1.mongo.uri
prok_update_geneset.py		prok_update_geneset.py
prok_update_geneset2.py		prok_update_geneset2.py
ref_rna_v2.check_relation.tsv		ref_rna_v2.check_relation.tsv
refresh_table_by_biomart.py		refresh_table_by_biomart.py
refrna.py		refrna.py
refrna_seq_kegg_link.py		refrna_seq_kegg_link.py
refrna_seq_pep_update.py		refrna_seq_pep_update.py
refrna_test_api.py		refrna_test_api.py
remote_upload.py		remote_upload.py
rna_db.stat.py		rna_db.stat.py
run_workflow.py		run_workflow.py
runtool.py		runtool.py
sftp.json		sftp.json
sg_toolpk_option.py		sg_toolpk_option.py
small_rna_add_new_exp.py		small_rna_add_new_exp.py
snp.py		snp.py
software_database2df.py		software_database2df.py
svg2pdf.py		svg2pdf.py
synfile.py		synfile.py
table2db.py		table2db.py
test.py		test.py
test2.py		test2.py
test3.py		test3.py
test_client.py		test_client.py
test_multi_thread.py		test_multi_thread.py
test_multi_thread2.py		test_multi_thread2.py
time_series_index_search.py		time_series_index_search.py
tool_ele.py		tool_ele.py
tool_env.py		tool_env.py
transformer_complete.py		transformer_complete.py
update_by_table.py		update_by_table.py
update_by_task.py		update_by_task.py
update_by_task_kegg.py		update_by_task_kegg.py
update_detail_scrna.py		update_detail_scrna.py
update_detail_scrna_mouse.py		update_detail_scrna_mouse.py
update_go.py		update_go.py
update_param_by_task.py		update_param_by_task.py
update_snp.py		update_snp.py
update_tos3.py		update_tos3.py
update_tos32.py		update_tos32.py
update_whole_detail.py		update_whole_detail.py
webapitoollabtest.py		webapitoollabtest.py
whole_rna_diff.update.py		whole_rna_diff.update.py
workflow_rerun.py		workflow_rerun.py