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Add radiation diagnostics for impurity transport #279

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@mikekryjak mikekryjak commented Dec 9, 2024

There are currently no diagnostics for impurity reactions. This PR sets up an outputVars object to provide a framework for diagnostics and adds only radiation for now.

  • Add radiation diagnostics to Ne
  • Comment out other impurities for easier testing
  • Test
  • Uncomment other impurity species

Radiation diagnostics added by modifying the calculate_rates function in the same way as for hydrogenic reactions. This requires all impurity species to be changed at the same time, so this commit comments them all out temporarily until Ne is tested to work well.
@mikekryjak mikekryjak marked this pull request as draft December 9, 2024 19:43
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