Update filters for rapid report

bcgsc · Oct 17, 2023 · fba2ec9 · fba2ec9
1 parent d80ce18
commit fba2ec9
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Showing 3 changed files with 52 additions and 2 deletions.
diff --git a/app/routes/report/variants.js b/app/routes/report/variants.js
@@ -40,6 +40,15 @@ const therapeuticAssociationFilter = {
     {[Op.is]: literal('distinct from \'msi\'')},
     {[Op.is]: literal('distinct from \'tmb\'')},
   ]},
+  [Op.or]: [
+    {
+      relevance: 'resistance',
+      iprEvidenceLevel: 'IPR-A',
+    },
+    {
+      relevance: 'sensitivity',
+    },
+  ],
   // Regex filter for finding columns with 2 or more spaces that end with
   // mutation or mutations
   [Op.not]: {kbVariant: {[Op.regexp]: MUTATION_REGEX}},

diff --git a/test/routes/report/variants.test.js b/test/routes/report/variants.test.js
@@ -42,7 +42,7 @@ const checkRapidReportMatches = (
   }
 
   kbMatches.forEach((match) => {
-    if (!match.evidenceLevel === expectedTable) {
+    if (!(match.evidenceLevel === expectedTable)) {
       found = false;
     }
   });
@@ -57,7 +57,7 @@ const checkVariantsFilter = (
   let found = true;
 
   variants.forEach((variant) => {
-    if (!variant.displayName === expectedTable) {
+    if (!(variant.displayName === expectedTable)) {
       found = false;
     }
   });

diff --git a/test/testData/mockRapidReportData.json b/test/testData/mockRapidReportData.json
@@ -10,6 +10,17 @@
             "iprEvidenceLevel": "IPR-A",
             "kbVariant": "this should be in table 1",
             "matchedCancer": true,
+            "relevance": "sensitivity",
+            "evidenceLevel": "table 1"
+        },
+        {
+            "category": "therapeutic",
+            "variantType": "cnv",
+            "variant": "TA",
+            "iprEvidenceLevel": "IPR-B",
+            "kbVariant": "this should be in table 1",
+            "matchedCancer": true,
+            "relevance": "resistance",
             "evidenceLevel": "table 1"
         },
         {
@@ -19,8 +30,38 @@
             "iprEvidenceLevel": "IPR-B",
             "kbVariant": "thisshouldbeintable1",
             "matchedCancer": true,
+            "relevance": "sensitivity",
             "evidenceLevel": "table 1"
         },
+        {
+            "category": "therapeutic",
+            "variantType": "cnv",
+            "variant": "TA",
+            "iprEvidenceLevel": "IPR-B",
+            "kbVariant": "thisshouldbeintable2",
+            "matchedCancer": true,
+            "relevance": "resistance",
+            "evidenceLevel": "table 2"
+        },
+        {
+            "category": "therapeutic",
+            "variantType": "cnv",
+            "variant": "TA",
+            "iprEvidenceLevel": "IPR-A",
+            "kbVariant": "this should be in table 2",
+            "matchedCancer": true,
+            "relevance": "no sensitivity",
+            "evidenceLevel": "table 2"
+        },
+        {
+            "category": "therapeutic",
+            "variantType": "cnv",
+            "variant": "TA",
+            "iprEvidenceLevel": "IPR-A",
+            "kbVariant": "this should be in table 2",
+            "matchedCancer": true,
+            "evidenceLevel": "table 2"
+        },
         {
             "category": "unknown",
             "variantType": "cnv",