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Amended changelog.
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bbuchfink committed Mar 18, 2020
1 parent adc14a3 commit a0bf453
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Showing 2 changed files with 1 addition and 12 deletions.
1 change: 1 addition & 0 deletions src/ChangeLog
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Expand Up @@ -6,6 +6,7 @@
- Added option `--culling-overlap` to set the minimum overlap with a higher scoring hit for a hit to be deleted and changed the
default value from 90% to 50%.
- Added command `diamond test` to run a series of regression tests.
- Fixed an off-by-one error of the query end position in the XML output format.

[0.9.30]
- Added support for output field `cigar` to the tabular format.
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12 changes: 0 additions & 12 deletions src/align/align.h
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Expand Up @@ -67,18 +67,6 @@ struct Ring_buffer_sink
void align_queries(Trace_pt_buffer &trace_pts, Consumer* output_file, const Parameters &params, const Metadata &metadata);

namespace ExtensionPipeline {
namespace Greedy {
struct Target;
struct Pipeline : public QueryMapper
{
Pipeline(const Parameters &params, size_t query_id, Trace_pt_list::iterator begin, Trace_pt_list::iterator end, const Metadata &metadata) :
QueryMapper(params, query_id, begin, end, metadata)
{}
Target& target(size_t i);
virtual void run(Statistics &stat, const sequence *subjects = nullptr, size_t subject_count = 0);
virtual ~Pipeline() {}
};
}
namespace Swipe {
struct Pipeline : public QueryMapper
{
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