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Baym Lab at Harvard Medical School

Microbial Evolution

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  1. wastewater_analysis wastewater_analysis Public

    Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

    Python 17 8

  2. 2020_Owen-BstA 2020_Owen-BstA Public

    Jupyter Notebook 3

  3. callmemobile callmemobile Public

    id putatively mobile genomic regions

    Python 2 1

  4. 2023_QuinonesOlvera-Owen 2023_QuinonesOlvera-Owen Public

    Code corresponding to the paper: Diverse and abundant viruses exploit conjugative plasmids (2023)

    Jupyter Notebook 1

  5. HMSphages HMSphages Public

    http://phages.hms.harvard.edu

  6. 2022_Limdi-TnSeq-LTEE 2022_Limdi-TnSeq-LTEE Public

    Data processing and analysis code for transposon mutagenesis sequencing of the Lenski Long-term evolution experiment

    Jupyter Notebook

Repositories

Showing 7 of 7 repositories
  • callmemobile Public

    id putatively mobile genomic regions

    baymlab/callmemobile’s past year of commit activity
    Python 2 1 0 0 Updated Dec 16, 2024
  • baymlab/HMSphages’s past year of commit activity
    0 0 0 0 Updated Jun 14, 2024
  • 2022_Limdi-TnSeq-LTEE Public

    Data processing and analysis code for transposon mutagenesis sequencing of the Lenski Long-term evolution experiment

    baymlab/2022_Limdi-TnSeq-LTEE’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 20, 2024
  • wastewater_analysis Public

    Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

    baymlab/wastewater_analysis’s past year of commit activity
    Python 17 MIT 8 5 0 Updated Sep 27, 2023
  • 2023_QuinonesOlvera-Owen Public

    Code corresponding to the paper: Diverse and abundant viruses exploit conjugative plasmids (2023)

    baymlab/2023_QuinonesOlvera-Owen’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Sep 7, 2023
  • 2022_Limdi_limits-pooled-fitness-assays Public

    Theory, simulations, and data analysis for design of pooled fitness assays

    baymlab/2022_Limdi_limits-pooled-fitness-assays’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 18, 2022
  • baymlab/2020_Owen-BstA’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Jul 14, 2020

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