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Add support for different patch initialization schemes (#81) #335

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Add support for different patch initialization schemes (#81)

Add support for different patch initialization schemes (#81) #335

Triggered via push October 24, 2024 20:49
@allison-li-1016allison-li-1016
pushed da9c929
develop
Status Success
Total duration 53s
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lint.yml

on: push
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52 errors and 2 warnings
[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L1 <com.puppycrawl.tools.checkstyle.checks.sizes.FileLengthCheck>: test/arcade/potts/sim/Potts3DTest.java#L1
File length is 2,371 lines (max allowed is 2,000).
[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L211 <com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyForIteratorPadCheck>: test/arcade/potts/sim/Potts3DTest.java#L211
';' is followed by whitespace.
[checkstyle] src/arcade/potts/sim/PottsSeries.java#L215 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/potts/sim/PottsSeries.java#L215
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/potts/vis/PottsVisualization.java#L174 <com.puppycrawl.tools.checkstyle.checks.sizes.MethodLengthCheck>: src/arcade/potts/vis/PottsVisualization.java#L174
Method create3DDrawers length is 277 lines (max allowed is 150).
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L41 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L41
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L42 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L42
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L43 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L43
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L48 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L48
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L49 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L49
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L50 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L50
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L51 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L51
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L52 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L52
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L53 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L53
Missing a Javadoc comment.
[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L54 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L54
Missing a Javadoc comment.
[checkstyle] src/arcade/core/gui/GUI.java#L374 <com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck>: src/arcade/core/gui/GUI.java#L374
Class XMLFileFilter should be declared as final.
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java#L66 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java#L66
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java#L96 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java#L96
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingComplex.java#L222 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessSignalingComplex.java#L222
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingMedium.java#L151 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessSignalingMedium.java#L151
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java#L80 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java#L80
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingRandom.java#L35 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessSignalingRandom.java#L35
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingSimple.java#L113 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessSignalingSimple.java#L113
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L186 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/cell/PatchCell.java#L186
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L362 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/cell/PatchCell.java#L362
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L488 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/cell/PatchCell.java#L488
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L495 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/cell/PatchCell.java#L495
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/cell/PatchCellCancerStem.java#L76 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/cell/PatchCellCancerStem.java#L76
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L81 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/module/PatchModuleProliferation.java#L81
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L109 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/module/PatchModuleProliferation.java#L109
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/agent/module/PatchModuleMigration.java#L60 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/module/PatchModuleMigration.java#L60
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L31 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L31
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L32 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L32
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L33 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L33
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L34 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L34
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L35 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L35
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L36 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L36
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L31 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L31
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L32 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L32
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L33 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L33
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L34 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L34
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/sim/output/PatchOutputSerializer.java#L148 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/sim/output/PatchOutputSerializer.java#L148
Comment matches to-do format 'TODO:'.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L48 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L48
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L49 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L49
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L50 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L50
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L51 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L51
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L52 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L52
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L53 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L53
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L54 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L54
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L55 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L55
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L60 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L60
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L61 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L61
Missing a Javadoc comment.
[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L62 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L62
Missing a Javadoc comment.
lint
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
lint
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/