Reduce the number of warning prints of heterogeneous GNN encoders when some nodes do not have in edges #5165
Workflow file for this run
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| # Graphstorm CI | |
| # Test execution order - [lint] -> [pytest] -> [end2end_cpu, end2end, end2end_mgpu] | |
| name: continuous-integration | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - ci_dev | |
| paths-ignore: | |
| - '.github/workflow_scripts/gsprocessing_pytest.sh' | |
| - '.github/workflow_scripts/gsprocessing_lint.sh' | |
| - 'graphstorm-processing/**' | |
| - '.github/workflows/gsprocessing-workflow.yml' | |
| - 'docs/**' | |
| pull_request_target: | |
| types: [ labeled, opened, reopened, synchronize, ready_for_review ] | |
| paths-ignore: | |
| - '.github/workflow_scripts/gsprocessing_pytest.sh' | |
| - '.github/workflow_scripts/gsprocessing_lint.sh' | |
| - 'graphstorm-processing/**' | |
| - '.github/workflows/gsprocessing-workflow.yml' | |
| - 'docs/**' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number || github.event.pull_request.head.sha }} | |
| cancel-in-progress: true | |
| permissions: | |
| id-token: write | |
| pull-requests: write | |
| contents: read | |
| defaults: | |
| run: | |
| shell: bash | |
| # All test scripts split in individual .sh files and moved to .github/workflow scripts | |
| env: | |
| COMMAND-PYTEST: chmod +x ./pytest_check.sh && ./pytest_check.sh | |
| COMMAND-LINT: chmod +x ./lint_check.sh && ./lint_check.sh | |
| COMMAND-E2E-CPU-TEST: chmod +x ./e2e_cpu_check.sh && ./e2e_cpu_check.sh | |
| COMMAND-E2E: chmod +x ./e2e_check.sh && ./e2e_check.sh | |
| COMMAND-E2E-MGPU: chmod +x ./e2e_mgpu_check.sh && ./e2e_mgpu_check.sh | |
| jobs: | |
| lint_check: | |
| if: ${{ github.event_name == 'push' || | |
| (github.event.label.name != 'draft' | |
| && github.event_name == 'pull_request_target' | |
| && contains(github.event.pull_request.labels.*.name, 'ready'))}} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role | |
| role-duration-seconds: 14400 | |
| aws-region: us-east-1 | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.x | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install pytest | |
| pip3 install boto3 | |
| - name: Submit Job (for Push) | |
| if: ${{ github.event_name == 'push' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Push" | |
| python3 ./submitJob.py --job-type CI-LINT-PUSH --name Graphstorm-LintTest-Push-'${{ github.ref }}' \ | |
| --command "${{ env.COMMAND-LINT }}" \ | |
| --remote https://github.com/'${{ github.repository }}' \ | |
| --source-ref '${{ github.ref }}' \ | |
| --wait | |
| - name: Submit Job (for Pull Request) | |
| if: ${{ github.event_name == 'pull_request_target' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Pull Request" | |
| python3 ./submitJob.py --job-type CI-LINT-PUSH --name Graphstorm-LintTest-PR#-'${{ github.event.number }}' \ | |
| --command "${{ env.COMMAND-LINT }}" \ | |
| --remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \ | |
| --source-ref '${{ github.event.pull_request.head.sha }}' \ | |
| --wait | |
| pytest_check: | |
| if: ${{ github.event.label.name != 'draft' }} | |
| needs: lint_check | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role | |
| aws-region: us-east-1 | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.x | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install pytest | |
| pip3 install boto3 | |
| - name: Submit Job (for Push) | |
| if: ${{ github.event_name == 'push' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Push" | |
| python3 ./submitJob.py --job-type CI-CPU-PUSH --name Graphstorm-PyTest-Push-'${{ github.ref }}' \ | |
| --command "${{ env.COMMAND-PYTEST }}" \ | |
| --remote https://github.com/'${{ github.repository }}' \ | |
| --source-ref '${{ github.ref }}' \ | |
| --wait | |
| - name: Submit Job (for Pull Request) | |
| if: ${{ github.event_name == 'pull_request_target' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Pull Request" | |
| python3 ./submitJob.py --job-type CI-CPU --name Graphstorm-PyTest-PR#-'${{ github.event.number }}' \ | |
| --command "${{ env.COMMAND-PYTEST }}" \ | |
| --remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \ | |
| --source-ref '${{ github.event.pull_request.head.sha }}' \ | |
| --wait | |
| e2e_cpu_check: | |
| if: ${{ github.event.label.name != 'draft' }} | |
| needs: [pytest_check, lint_check] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role | |
| aws-region: us-east-1 | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.x | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install pytest | |
| pip3 install boto3 | |
| - name: Submit Job (for Push) | |
| if: ${{ github.event_name == 'push' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Push" | |
| python3 ./submitJob.py --job-type CI-CPU-CHECK-PUSH --name Graphstorm-E2ETest-CPU-Push-'${{ github.ref }}' \ | |
| --command "${{ env.COMMAND-E2E-CPU-TEST }}" \ | |
| --remote https://github.com/'${{ github.repository }}' \ | |
| --source-ref '${{ github.ref }}' \ | |
| --wait | |
| - name: Submit Job (for Pull Request) | |
| if: ${{ github.event_name == 'pull_request_target' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Pull Request" | |
| python3 ./submitJob.py --job-type CI-CPU-CHECK --name Graphstorm-E2ETest-CPU-PR#-'${{ github.event.number }}' \ | |
| --command "${{ env.COMMAND-E2E-CPU-TEST }}" \ | |
| --remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \ | |
| --source-ref '${{ github.event.pull_request.head.sha }}' \ | |
| --wait | |
| e2e_check: | |
| if: ${{ github.event.label.name != 'draft' }} | |
| needs: [pytest_check, lint_check] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role | |
| aws-region: us-east-1 | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.x | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install pytest | |
| pip3 install boto3 | |
| - name: Submit Job (for Push) | |
| if: ${{ github.event_name == 'push' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Push" | |
| python3 ./submitJob.py --job-type CI-CPU-PUSH --name Graphstorm-E2ETest-Push-'${{ github.ref }}' \ | |
| --command "${{ env.COMMAND-E2E }}" \ | |
| --remote https://github.com/'${{ github.repository }}' \ | |
| --source-ref '${{ github.ref }}' \ | |
| --wait | |
| - name: Submit Job (for Pull Request) | |
| if: ${{ github.event_name == 'pull_request_target' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Pull Request" | |
| python3 ./submitJob.py --job-type CI-CPU --name Graphstorm-E2ETest-PR#-'${{ github.event.number }}' \ | |
| --command "${{ env.COMMAND-E2E }}" \ | |
| --remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \ | |
| --source-ref '${{ github.event.pull_request.head.sha }}' \ | |
| --wait | |
| e2e_mgpu_check: | |
| if: ${{ github.event.label.name != 'draft' }} | |
| needs: [pytest_check, lint_check] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role | |
| aws-region: us-east-1 | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.x | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install pytest | |
| pip3 install boto3 | |
| - name: Submit Job (for Push) | |
| if: ${{ github.event_name == 'push' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Push" | |
| python3 ./submitJob.py --job-type CI-GPU-PUSH --name Graphstorm-E2E-MGPUTest-Push-'${{ github.ref }}' \ | |
| --command "${{ env.COMMAND-E2E-MGPU }}" \ | |
| --remote https://github.com/'${{ github.repository }}' \ | |
| --source-ref '${{ github.ref }}' \ | |
| --wait | |
| - name: Submit Job (for Pull Request) | |
| if: ${{ github.event_name == 'pull_request_target' }} | |
| shell: bash | |
| run: | | |
| echo "Start submitting job - Pull Request" | |
| python3 ./submitJob.py --job-type CI-GPU --name Graphstorm-E2E-MGPUTest-PR#-'${{ github.event.number }}' \ | |
| --command "${{ env.COMMAND-E2E-MGPU }}" \ | |
| --remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \ | |
| --source-ref '${{ github.event.pull_request.head.sha }}' \ | |
| --wait | |