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[Bugfix] Fix WholeGraph import issue #5149

[Bugfix] Fix WholeGraph import issue

[Bugfix] Fix WholeGraph import issue #5149

# Graphstorm CI
# Test execution order - [lint] -> [pytest] -> [end2end_cpu, end2end, end2end_mgpu]
name: continuous-integration
on:
push:
branches:
- main
- ci_dev
paths-ignore:
- '.github/workflow_scripts/gsprocessing_pytest.sh'
- '.github/workflow_scripts/gsprocessing_lint.sh'
- 'graphstorm-processing/**'
- '.github/workflows/gsprocessing-workflow.yml'
- 'docs/**'
pull_request_target:
types: [ labeled, opened, reopened, synchronize, ready_for_review ]
paths-ignore:
- '.github/workflow_scripts/gsprocessing_pytest.sh'
- '.github/workflow_scripts/gsprocessing_lint.sh'
- 'graphstorm-processing/**'
- '.github/workflows/gsprocessing-workflow.yml'
- 'docs/**'
concurrency:
group: ${{ github.workflow }}-${{ github.event.number || github.event.pull_request.head.sha }}
cancel-in-progress: true
permissions:
id-token: write
pull-requests: write
contents: read
defaults:
run:
shell: bash
# All test scripts split in individual .sh files and moved to .github/workflow scripts
env:
COMMAND-PYTEST: chmod +x ./pytest_check.sh && ./pytest_check.sh
COMMAND-LINT: chmod +x ./lint_check.sh && ./lint_check.sh
COMMAND-E2E-CPU-TEST: chmod +x ./e2e_cpu_check.sh && ./e2e_cpu_check.sh
COMMAND-E2E: chmod +x ./e2e_check.sh && ./e2e_check.sh
COMMAND-E2E-MGPU: chmod +x ./e2e_mgpu_check.sh && ./e2e_mgpu_check.sh
jobs:
lint_check:
if: ${{ github.event_name == 'push' ||
(github.event.label.name != 'draft'
&& github.event_name == 'pull_request_target'
&& contains(github.event.pull_request.labels.*.name, 'ready'))}}
runs-on: ubuntu-latest
steps:
- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v1
with:
role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role
role-duration-seconds: 14400
aws-region: us-east-1
- name: Checkout repository
uses: actions/checkout@v3
- name: Set up Python 3.x
uses: actions/setup-python@v4
with:
python-version: '3.x'
- name: Install dependencies
shell: bash
run: |
python3 -m pip install --upgrade pip
python3 -m pip install pytest
pip3 install boto3
- name: Submit Job (for Push)
if: ${{ github.event_name == 'push' }}
shell: bash
run: |
echo "Start submitting job - Push"
python3 ./submitJob.py --job-type CI-LINT-PUSH --name Graphstorm-LintTest-Push-'${{ github.ref }}' \
--command "${{ env.COMMAND-LINT }}" \
--remote https://github.com/'${{ github.repository }}' \
--source-ref '${{ github.ref }}' \
--wait
- name: Submit Job (for Pull Request)
if: ${{ github.event_name == 'pull_request_target' }}
shell: bash
run: |
echo "Start submitting job - Pull Request"
python3 ./submitJob.py --job-type CI-LINT-PUSH --name Graphstorm-LintTest-PR#-'${{ github.event.number }}' \
--command "${{ env.COMMAND-LINT }}" \
--remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \
--source-ref '${{ github.event.pull_request.head.sha }}' \
--wait
pytest_check:
if: ${{ github.event.label.name != 'draft' }}
needs: lint_check
runs-on: ubuntu-latest
steps:
- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v1
with:
role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role
aws-region: us-east-1
- name: Checkout repository
uses: actions/checkout@v3
- name: Set up Python 3.x
uses: actions/setup-python@v4
with:
python-version: '3.x'
- name: Install dependencies
shell: bash
run: |
python3 -m pip install --upgrade pip
python3 -m pip install pytest
pip3 install boto3
- name: Submit Job (for Push)
if: ${{ github.event_name == 'push' }}
shell: bash
run: |
echo "Start submitting job - Push"
python3 ./submitJob.py --job-type CI-CPU-PUSH --name Graphstorm-PyTest-Push-'${{ github.ref }}' \
--command "${{ env.COMMAND-PYTEST }}" \
--remote https://github.com/'${{ github.repository }}' \
--source-ref '${{ github.ref }}' \
--wait
- name: Submit Job (for Pull Request)
if: ${{ github.event_name == 'pull_request_target' }}
shell: bash
run: |
echo "Start submitting job - Pull Request"
python3 ./submitJob.py --job-type CI-CPU --name Graphstorm-PyTest-PR#-'${{ github.event.number }}' \
--command "${{ env.COMMAND-PYTEST }}" \
--remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \
--source-ref '${{ github.event.pull_request.head.sha }}' \
--wait
e2e_cpu_check:
if: ${{ github.event.label.name != 'draft' }}
needs: [pytest_check, lint_check]
runs-on: ubuntu-latest
steps:
- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v1
with:
role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role
aws-region: us-east-1
- name: Checkout repository
uses: actions/checkout@v3
- name: Set up Python 3.x
uses: actions/setup-python@v4
with:
python-version: '3.x'
- name: Install dependencies
shell: bash
run: |
python3 -m pip install --upgrade pip
python3 -m pip install pytest
pip3 install boto3
- name: Submit Job (for Push)
if: ${{ github.event_name == 'push' }}
shell: bash
run: |
echo "Start submitting job - Push"
python3 ./submitJob.py --job-type CI-CPU-CHECK-PUSH --name Graphstorm-E2ETest-CPU-Push-'${{ github.ref }}' \
--command "${{ env.COMMAND-E2E-CPU-TEST }}" \
--remote https://github.com/'${{ github.repository }}' \
--source-ref '${{ github.ref }}' \
--wait
- name: Submit Job (for Pull Request)
if: ${{ github.event_name == 'pull_request_target' }}
shell: bash
run: |
echo "Start submitting job - Pull Request"
python3 ./submitJob.py --job-type CI-CPU-CHECK --name Graphstorm-E2ETest-CPU-PR#-'${{ github.event.number }}' \
--command "${{ env.COMMAND-E2E-CPU-TEST }}" \
--remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \
--source-ref '${{ github.event.pull_request.head.sha }}' \
--wait
e2e_check:
if: ${{ github.event.label.name != 'draft' }}
needs: [pytest_check, lint_check]
runs-on: ubuntu-latest
steps:
- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v1
with:
role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role
aws-region: us-east-1
- name: Checkout repository
uses: actions/checkout@v3
- name: Set up Python 3.x
uses: actions/setup-python@v4
with:
python-version: '3.x'
- name: Install dependencies
shell: bash
run: |
python3 -m pip install --upgrade pip
python3 -m pip install pytest
pip3 install boto3
- name: Submit Job (for Push)
if: ${{ github.event_name == 'push' }}
shell: bash
run: |
echo "Start submitting job - Push"
python3 ./submitJob.py --job-type CI-CPU-PUSH --name Graphstorm-E2ETest-Push-'${{ github.ref }}' \
--command "${{ env.COMMAND-E2E }}" \
--remote https://github.com/'${{ github.repository }}' \
--source-ref '${{ github.ref }}' \
--wait
- name: Submit Job (for Pull Request)
if: ${{ github.event_name == 'pull_request_target' }}
shell: bash
run: |
echo "Start submitting job - Pull Request"
python3 ./submitJob.py --job-type CI-CPU --name Graphstorm-E2ETest-PR#-'${{ github.event.number }}' \
--command "${{ env.COMMAND-E2E }}" \
--remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \
--source-ref '${{ github.event.pull_request.head.sha }}' \
--wait
e2e_mgpu_check:
if: ${{ github.event.label.name != 'draft' }}
needs: [pytest_check, lint_check]
runs-on: ubuntu-latest
steps:
- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v1
with:
role-to-assume: arn:aws:iam::698571788627:role/github-oidc-role
aws-region: us-east-1
- name: Checkout repository
uses: actions/checkout@v3
- name: Set up Python 3.x
uses: actions/setup-python@v4
with:
python-version: '3.x'
- name: Install dependencies
shell: bash
run: |
python3 -m pip install --upgrade pip
python3 -m pip install pytest
pip3 install boto3
- name: Submit Job (for Push)
if: ${{ github.event_name == 'push' }}
shell: bash
run: |
echo "Start submitting job - Push"
python3 ./submitJob.py --job-type CI-GPU-PUSH --name Graphstorm-E2E-MGPUTest-Push-'${{ github.ref }}' \
--command "${{ env.COMMAND-E2E-MGPU }}" \
--remote https://github.com/'${{ github.repository }}' \
--source-ref '${{ github.ref }}' \
--wait
- name: Submit Job (for Pull Request)
if: ${{ github.event_name == 'pull_request_target' }}
shell: bash
run: |
echo "Start submitting job - Pull Request"
python3 ./submitJob.py --job-type CI-GPU --name Graphstorm-E2E-MGPUTest-PR#-'${{ github.event.number }}' \
--command "${{ env.COMMAND-E2E-MGPU }}" \
--remote https://github.com/'${{ github.event.pull_request.head.repo.full_name }}' \
--source-ref '${{ github.event.pull_request.head.sha }}' \
--wait