re-formats and lint fixes

awslabs · Sep 27, 2024 · 7584a19 · 7584a19
1 parent 6edbb73
commit 7584a19
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/omics/cli/run_analyzer/__main__.py b/omics/cli/run_analyzer/__main__.py
@@ -33,7 +33,7 @@
  -t, --time=<interval>          Select runs over a time interval [default: 1day]
  -s, --show                     Show run resources with no post-processing (JSON)
  -T, --timeline                 Show workflow run timeline
- 
+
  -h, --help                     Show help text
  --version                      Show the version of this application
 

diff --git a/omics/cli/run_analyzer/batch.py b/omics/cli/run_analyzer/batch.py
@@ -53,7 +53,6 @@ def _aggregate_resources(
     run_resources_list: list[list[dict]], task_base_name: str, engine: str, out
 ):
     """Aggregate resources with the same base name"""
-
     run_tasks_with_name: list[dict] = []
 
     for run_resources in run_resources_list:

diff --git a/omics/cli/run_analyzer/writeconfig.py b/omics/cli/run_analyzer/writeconfig.py
@@ -2,6 +2,7 @@
 
 
 def create_config(engine, task_resources, filename):
+    """Create a config file based on recommended CPU and Memory values"""
     if engine == "NEXTFLOW":
         with open(filename, "w") as out:
             for task in task_resources:
@@ -24,7 +25,7 @@ def create_config(engine, task_resources, filename):
 
 
 def get_base_task(engine, task):
-    # Returns the base task name
+    """Return the base task name"""
     if engine == "NEXTFLOW":
         individual_task = task.split(" ")[0]
         return individual_task

diff --git a/tests/run_analyzer/unit/test_writeconfig.py b/tests/run_analyzer/unit/test_writeconfig.py
@@ -9,7 +9,7 @@ def test_get_base_task_nextflow(self):
         self.assertEqual(result, "task1")
 
     def test_get_base_task_cwl(self):
-        result = writeconfig.get_base_task("CWL", "task1 (sample1)")
+        _ = writeconfig.get_base_task("CWL", "task1 (sample1)")
         self.assertRaises(ValueError)