include title for qq_plots

arthurkorte · Mar 28, 2021 · 77671dd · 77671dd
1 parent 8b764d2
commit 77671dd
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/gwas.r b/gwas.r
@@ -35,7 +35,7 @@
 
 # mc enabled to use on linux 
 
-amm_gwas<-function(Y,X,K,p=0.001,m=2,run=TRUE,AI=TRUE,calculate.effect.size=FALSE,include.lm=FALSE,include.kw=FALSE,use.SNP_INFO=FALSE,update.top_snps=FALSE,report=TRUE,plot_h=FALSE, mc = FALSE, cores ='all') {
+amm_gwas<-function(Y,X,K,p=0.001,m=2,run=TRUE,AI=FALSE,calculate.effect.size=FALSE,include.lm=FALSE,include.kw=FALSE,use.SNP_INFO=FALSE,update.top_snps=FALSE,report=TRUE,plot_h=FALSE, mc = FALSE, cores ='all') {
 
     stopifnot(is.numeric(Y[,1]))
     Y_ <- Y[order(Y[,1]),]

diff --git a/plots_gwas.r b/plots_gwas.r
@@ -56,7 +56,7 @@ abline(v=poso,lty=2,col=2)}
 }
 
 
-qq_plot<-function(output,h=8,farbe='red',max.y=NA,maf=0.05,sex=2) {
+qq_plot<-function(output,h=8,farbe='red',max.y=NA,maf=0.05,sex=2,main='') {
 colnames(output)[h]<-'Plot'
 out_<-subset(output,output$MAF>maf)
 
@@ -72,6 +72,7 @@ plot(e,o,type='l',col=farbe,xlab=expression(Expected~~-log[10](italic(p))), ylab
 abline(0,1,col="dark grey")
 axis(1,lwd=2)
 axis(2,lwd=2)
+title(main=main)
 }