Add flair to processing check (#1028)

* improvements of Genfi * Revert "improvements of Genfi" This reverts commit c79fb80. * add_flair_to_processing_check --------- Co-authored-by: JOULOT Matthieu <[email protected]> Co-authored-by: JOULOT Matthieu <[email protected]>
aramis-lab · Dec 4, 2023 · 5894f73 · 5894f73
1 parent 9a40c3f
commit 5894f73
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/clinica/iotools/utils/data_handling.py b/clinica/iotools/utils/data_handling.py
@@ -528,6 +528,12 @@ def compute_missing_processing(bids_dir, caps_dir, out_file):
             else:
                 row_df.loc[0, "t1-linear"] = "0"
 
+            # Check flair-linear outputs
+            if path.exists(path.join(session_path, "flair_linear")):
+                row_df.loc[0, "flair-linear"] = "1"
+            else:
+                row_df.loc[0, "flair-linear"] = "0"
+
             # Check t1-freesurfer outputs
             if path.exists(path.join(session_path, "t1", "freesurfer_cross_sectional")):
                 row_df.loc[0, "t1-freesurfer"] = "1"