DNASearch

Hello! This is a tool for looking up DNA sequences by species in Elixir.

Installation

Add DNASearch to your list of dependencies in mix.exs:

def deps do
  [{:dna_search, "~> 0.0.1"}]
end

Usage

iex> DNASearch.get_sequences("Pionus maximiliani", limit: 1)
["CGCGAAACAGGTGTCTCTTGGTTCCGACTGACCTGTGCTTTTATGAGCTTGTTGGTTTAGTTAGTTTGTTGGGGGTTGTTGGGTTTTGGGTTTGGGTTTTTTTCCTCCTTTTCTAGACACATATTTTTGACAGGCTGTATAAAACTTTACTTATCTTTGTTAATAATGTAGCTTTGAACTACTTATTCTGACATTCCAGATCAGCTTTAATGGAAGTGAAGGGAGGCGAAGTAGGAGTAGAAGATACTCTGGATCTGATAGTGACTCTATCTCGGAAAGGAAACGGCCAAAAAAGCGTGGAAGACCACGAACTATTCCTCGAGAAAATATT"]


iex> DNASearch.get_fasta_data("Pionus maximiliani", limit: 1)
[
  %FASTA.Datum{
    header: "gi|925719343|gb|KR019962.1| Pionus maximiliani voucher PMAX-COESP chromo-helicase-DNA binding protein-Z (CHDZ) gene, exons 23, 24 and partial cds",
    sequence: "CGCGAAACAGGTGTCTCTTGGTTCCGACTGACCTGTGCTTTTATGAGCTTGTTGGTTTAGTTAGTTTGTTGGGGGTTGTTGGGTTTTGGGTTTGGGTTTTTTTCCTCCTTTTCTAGACACATATTTTTGACAGGCTGTATAAAACTTTACTTATCTTTGTTAATAATGTAGCTTTGAACTACTTATTCTGACATTCCAGATCAGCTTTAATGGAAGTGAAGGGAGGCGAAGTAGGAGTAGAAGATACTCTGGATCTGATAGTGACTCTATCTCGGAAAGGAAACGGCCAAAAAAGCGTGGAAGACCACGAACTATTCCTCGAGAAAATATT"
  }
]

View full documentation here.

Contributing

Bug reports and pull requests are welcome on GitHub at https://github.com/annejohnson/dna_search. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the Contributor Covenant code of conduct.