tonic-vitessce

Vitessce Configs and Data Conversion for the TONIC Publication.

Development

Getting started

• src/ contains the package which to convert the data from .csv, and .tiff into AnnData .zarr and OME-ZARR ome.zarr files
• ghpages-site contains the source for the GitHub Pages website.
  • The site uses Astro JS for the build system, and TypeScript + React for the functionality.
  • You can find the Vitessce Config for the TONIC data here

Installation

You need to have Python 3.10 or newer installed on your system. If you don't have Python installed, we recommend installing Mambaforge or Rye if you prefer to use a .venv.

1. Install the latest development version by cloning the repo

git clone https://github.com/angelolab/tonic-vitessce.git
pip install tonic-vitessce/tonic-vitessce

Release notes

See the changelog.

Contact

If you found a bug, please use the issue tracker.

Citation

t.b.a