The latest release of toffy features updated Rosetta Compensation, the deprecation of the tiling notebook, user experience improvements, along with documentation improvements and dependency housekeeping.
🚀 Features
- Check for all run merge conflicts @camisowers (#435)
- Partial FOVs clarification @camisowers (#419)
- Check for missing fovs after run is complete @camisowers (#410)
- Helper function for scaling images @camisowers (#415)
🐛 Bug Fixes
-
Prevent mass column from adding during
rosetta.combine_compensation_files@alex-l-kong (#444) -
Ensure low sensitivity normalization correction works with negative values too @alex-l-kong (#428)
-
Use updated round 2 Rosetta folder path spec @alex-l-kong (#422)
-
Space optimization for tiled Rosetta images @alex-l-kong (#421)
-
Fix rosetta comparison image output @camisowers (#451)
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Add scaling to rosetta source channel images @camisowers (#440)
-
Provide more robust round 1 -> round 2 copying @alex-l-kong (#426)
-
Standardize indexing of over- and under-normalized channels in
normalize_fov@alex-l-kong (#427)
🧰 Maintenance
- Release
v0.2.2@srivarra (#452) - Updated the
toffyenvironment file @srivarra (#434) - Ensure safe conversion of panel types during
modify_panel_ranges@alex-l-kong (#443) - Update pulse height generation to be compatible with
mibi-bin-tools==0.2.11@alex-l-kong (#436) jupyter_contrib_nbextensionsfix @srivarra (#429)
📚️ Documentation
- Indicate incompatible normalization notebook with MIBIcontrol 1.8 @alex-l-kong (#418)
- MIT License @srivarra (#448)
- Add pre-commit to standardize toffy documentation @camisowers (#437)
- Cite TSAI in tiling notebooks, deprecating them @alex-l-kong (#420)
