bird5eye

Source code for bird5eye: 2D radiative transfer in natural waters

Model variable key

Bandwith run: 'sing' = Single; 'spec' = Spectral;
Jerlov types: 'PW' = Pure Water; 'I'; 'IA'; 'IB'; 'II'; 'III'; '3C'; '5C'; '7C'; '9C'
Chlorophyl types: Choose 'Jerlov' for automatic assignment based on Jerlov type Choose 'PR' for Phil Roberts' assignments for Jerlov types IB, II, III Choose from Uitz' 9 stratified classes 'S1' to 'S9' Choose from Platt's Celtic Green Sea 'CG' or New England Harbour 'NE'
Phase functions: 'FF' = Fournier-Fourand 'AP' = 'Average Petzold' 'HG' = Henyey-Greenstein
Pure water absorption data: 'PS' = Prieur-Sathyendranath (1981), only between 400-700nm 'SB' = Smith-Baker (1981) 'PF' = Pope-Fry (1997)
To activate inelastic scattering: 'off' 'raman' for Raman inelastic scattering only (may be used with 'PW') 'fluo' for chl and cdom fluorescence (chlorophyll excitation: 370-690) 'all'
To use the classic or new IOP selection 'new' 'old'

Name		Name	Last commit message	Last commit date
Latest commit History 27 Commits
boundaries		boundaries
chlorophyl		chlorophyl
colours		colours
data_hcube		data_hcube
data_input		data_input
data_raw		data_raw
iops		iops
params		params
plotting_tools		plotting_tools
saved_params		saved_params
.gitignore		.gitignore
README.md		README.md
_macbeth_pallet_ref.png		_macbeth_pallet_ref.png
bandwidth_avg.m		bandwidth_avg.m
bird5eye.m		bird5eye.m
run_all.m		run_all.m
run_check.m		run_check.m
run_fixed_depth.m		run_fixed_depth.m
run_sinking_depth.m		run_sinking_depth.m
run_sinking_macbeth.m		run_sinking_macbeth.m
vis_chl_types.m		vis_chl_types.m
vis_compare.m		vis_compare.m
vis_experiment.m		vis_experiment.m
vis_irradiance_plot.m		vis_irradiance_plot.m
vis_irradiance_top.m		vis_irradiance_top.m
vis_mac_cross.asv		vis_mac_cross.asv
vis_mac_cross.m		vis_mac_cross.m
vis_mac_pallet.m		vis_mac_pallet.m