refactored taxonomy pins

R/generated-globals.R

@@ -76,8 +76,6 @@ utils::globalVariables(c(
   "price",
   # <opps>
   "procstat",
-  # <taxonomy>
-  "results",
   # <case_section>
   "section",
   # <level2>

R/taxonomy.R

@@ -95,13 +95,13 @@
 #' taxonomies, but "Radiology Chiropractor" more accurately specifies the provider.
 #'
 #' @section Description:
-#' + `taxonomy_code`: Provider Taxonomy Code
-#' + `taxonomy_category`: Indicates whether Taxonomy is Individual or Non-Individual, i.e., a group taxonomy
-#' + `taxonomy_grouping`: Level I, Provider Grouping
-#' + `taxonomy_classification`: Level II, Classification
-#' + `taxonomy_specialization`: Level III, Area of Specialization
-#' + `taxonomy_display_name`: Consumer-friendly taxonomy name, made of the code name and the Level in which the code is nested.
-#' + `taxonomy_definition`: Definition of Taxonomy
+#' + `code`: Provider Taxonomy Code
+#' + `category`: Indicates whether Taxonomy is Individual or Non-Individual, i.e., a group taxonomy
+#' + `grouping`: Level I, Provider Grouping
+#' + `classification`: Level II, Classification
+#' + `specialization`: Level III, Area of Specialization
+#' + `display_name`: Consumer-friendly taxonomy name, made of the code name and the Level in which the code is nested.
+#' + `definition`: Definition of Taxonomy
 #' + `version`: Three digit version of the code set. The first two digits indicate the year and the third digit indicates either the first release of the year ("0") or the second release of the year ("1").
 #' + `release_date`: Date the version of the code set was released
 #'
@@ -113,16 +113,22 @@
 #' @return A [tibble][tibble::tibble-package] with the columns:
 #'
 #' @examplesIf interactive()
-#' taxonomy()
+#' taxonomy("wide")
+#'
+#' taxonomy("long")
 #' @autoglobal
 #' @export
 taxonomy <- function(shape = c('wide', 'long')) {
 
   shape <- match.arg(shape)
 
-  if (shape == 'wide') {return(pins::pin_read(mount_board(), "taxonomy"))}
+  if (shape == 'wide') {
+    results <- pins::pin_read(mount_board(), "taxonomy")
+  }
 
-  if (shape == 'long') {return(pins::pin_read(mount_board(), "tax_long"))}
+  if (shape == 'long') {
+    results <- pins::pin_read(mount_board(), "tax_long")
+  }
 
   return(results)
 }

data-raw/taxonomy.R

@@ -12,33 +12,35 @@ x <- rvest::session(paste0("https://www.nucc.org", x)) |>
 
 x <- x$response$url
 
-x <- data.table::fread(x) |>
+taxonomy <- data.table::fread(x) |>
   dplyr::tibble() |>
   janitor::clean_names() |>
   dplyr::mutate(
     dplyr::across(dplyr::everything(), ~ dplyr::na_if(., "")),
-    dplyr::across(dplyr::everything(), ~ stringr::str_squish(.)))
-  # dplyr::select(
-  #   taxonomy_code = code,
-  #   taxonomy_category = section,
-  #   taxonomy_grouping = grouping,
-  #   taxonomy_classification = classification,
-  #   taxonomy_specialization = specialization,
-  #   taxonomy_display_name = display_name,
-  #   taxonomy_definition = definition)
-
-x <- x |>
-  dplyr::mutate(version = as.integer(240),
+    dplyr::across(dplyr::everything(), ~ stringr::str_squish(.))) |>
+  dplyr::mutate(version = as.character(240),
                 release_date = lubridate::ymd("2024-01-01"))
-x
+taxonomy <- taxonomy |>
+  dplyr::select(
+    code,
+    display_name,
+    section,
+    grouping,
+    classification,
+    specialization,
+    definition,
+    notes,
+    version,
+    release_date
+    )
 # https://www.nucc.org/images/stories/CSV/nucc_taxonomy_240.csv
 # "2023-07-01"
 # "2024-01-01"
 
-info <- x |>
+info <- taxonomy |>
   dplyr::select(code, display_name, definition, notes)
 
-long <- x |>
+long <- taxonomy |>
   dplyr::select(code,
                 section,
                 grouping,
@@ -55,13 +57,16 @@ long <- x |>
   tidyr::pivot_longer(!code, names_to = "level", values_to = "description") |>
   dplyr::filter(description != "3") |>
   tidyr::separate_wider_delim(description, delim = "_", names = c("description", "group")) |>
-  dplyr::mutate(group = NULL, level = factor(level,
-                                             levels = c("section", "grouping", "classification", "specialization"),
-                                             labels = c("I. Section", "II. Grouping", "III. Classification", "IV. Specialization"), ordered = TRUE))
+  dplyr::mutate(group = NULL,
+                level = factor(level,
+                               levels = c("section", "grouping", "classification", "specialization"),
+                               labels = c("I. Section", "II. Grouping", "III. Classification", "IV. Specialization"),
+                               ordered = TRUE))
 
 longnest <- long |>
   dplyr::left_join(info, by = "code") |>
-  tidyr::nest(hierarchy = c(level, description))
+  tidyr::nest(hierarchy = c(level, description)) |>
+  dplyr::select(code, display_name, hierarchy, definition, notes)
 
 # Update Pin
 board <- pins::board_folder(here::here("pins"))
@@ -74,8 +79,8 @@ board |>
                   type = "qs")
 
 board |>
-  pins::pin_write(x,
-                  name = "tax_long",
+  pins::pin_write(longnest,
+                  name = "taxlong",
                   title = "Provider Taxonomy Code Set",
                   description = "NUCC Health Care Provider Taxonomy Code Set January 2024",
                   type = "qs")

pins/_pins.yaml

@@ -22,7 +22,9 @@ rbcs:
 - rbcs/20240311T110445Z-95e7b/
 rvu:
 - rvu/20240308T222534Z-f2d79/
+taxlong:
+- taxlong/20240321T212817Z-972c7/
 taxonomy:
-- taxonomy/20240320T230832Z-a71a1/
+- taxonomy/20240321T212812Z-28971/
 tax_long:
 - tax_long/20240320T232744Z-a71a1/

pins/taxlong/20240321T212817Z-972c7/data.txt

@@ -0,0 +1,10 @@
+file: taxlong.qs
+file_size: 105576
+pin_hash: 972c745ebfbd01bf
+type: qs
+title: Provider Taxonomy Code Set
+description: NUCC Health Care Provider Taxonomy Code Set January 2024
+tags: ~
+urls: ~
+created: 20240321T212817Z
+api_version: 1

pins/taxonomy/20240320T230832Z-a71a1/data.txt → pins/taxonomy/20240321T212812Z-28971/data.txt

@@ -1,10 +1,10 @@
 file: taxonomy.qs
-file_size: 101270
-pin_hash: a71a19811243ea18
+file_size: 101
+pin_hash: 28971fd5683abb7d
 type: qs
 title: Provider Taxonomy Code Set
 description: NUCC Health Care Provider Taxonomy Code Set January 2024
 tags: ~
 urls: ~
-created: 20240320T230832Z
+created: 20240321T212812Z
 api_version: 1