GCcontent

calculate GC percentage for reference genomes with multiple windows

Dependency

IntSiteRetriver(only for testing and timing): https://github.com/anatolydryga/intSiteRetriever

has to be cloned:

git clone https://github.com/anatolydryga/intSiteRetriever

Testing

Run in the R console:

library(testthat)
source('GCcontent.R')
test_dir(".")

Timing

source('timing_GCcontent.R')
time_GC()