Skip to content

v0.5.0

Compare
Choose a tag to compare
@github-actions github-actions released this 05 Sep 18:25

Added

  • pytrimal.RepresentativeTrimmer class to trim by maximum identity or fixed number of cluster representatives.
  • pickle protocol support for all trimmer classes.
  • Conversion methods to convert an Alignment from and to Biopython or PyHMMER objects.
  • Arm NEON implementation of the statistics computation algorithm, with speed-up similar to that of the SSE implementation.

Fixed

  • std::streambuf implementation based on the readinto Python method not working on Arm because of char being used to read ASCII.

Removed

  • Support for Python 3.5, due to Cython compatibility issues.