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Drop support for python 3.8 #4414

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d27712c
drop support for python 3.8
MichaelFu512 May 1, 2024
4977320
update to python3.9
MichaelFu512 May 1, 2024
d6274d5
fix docs lint
MichaelFu512 May 1, 2024
714e2fd
sphinx
MichaelFu512 May 1, 2024
71c8f21
another sphinx
MichaelFu512 May 1, 2024
e7e7130
Merge branch 'main' into remove3.8
MichaelFu512 May 6, 2024
ee19fa4
meta
MichaelFu512 May 6, 2024
474a681
more 3.8 removal
MichaelFu512 May 6, 2024
18833c1
release notes
MichaelFu512 May 6, 2024
45a2681
dependency?
MichaelFu512 May 6, 2024
0dd515f
pin vowpalwabbit, pyyaml, kaleido
MichaelFu512 May 7, 2024
d196931
scikit-learn pin to test if test pass now
MichaelFu512 May 7, 2024
effad5c
oops
MichaelFu512 May 7, 2024
64a89f7
conda and latest
MichaelFu512 May 7, 2024
45ac1e1
iunno
MichaelFu512 May 7, 2024
fa9a157
maybe now it works iunno
MichaelFu512 May 7, 2024
e6df0d0
??
MichaelFu512 May 7, 2024
e3aeb7d
okay now i'm genuinely confused
MichaelFu512 May 7, 2024
dfd8b4e
meta change test
MichaelFu512 May 7, 2024
0b07ed5
test 1, remove from line 80
MichaelFu512 May 7, 2024
523f5d5
test 2, remove from 42
MichaelFu512 May 7, 2024
d5d7cdd
test 3, remove from line 23
MichaelFu512 May 7, 2024
9433dd3
upped pytest version and nbval
MichaelFu512 May 7, 2024
2d65cb3
trying new conda install
MichaelFu512 May 8, 2024
7643e07
pango library
MichaelFu512 May 9, 2024
23c514d
put cap back on pytest
MichaelFu512 May 9, 2024
369139a
conda failure
MichaelFu512 May 9, 2024
9e5c608
windows fix?
MichaelFu512 May 9, 2024
595dd6d
take 2?
MichaelFu512 May 9, 2024
1a630e4
downgrade kaleido
MichaelFu512 May 9, 2024
91955a6
vowpalwabbit and pyyaml pin revert
MichaelFu512 May 10, 2024
609dc7b
Merge branch 'main' into remove3.8
MichaelFu512 May 10, 2024
4aeebc2
revert nlp-primitives min requirement
MichaelFu512 May 10, 2024
7fc1b46
Sphinx revert
MichaelFu512 May 10, 2024
736f2dd
Sphinx build causes errors so change
MichaelFu512 May 10, 2024
6eee809
semi revert of Sphinx revert lol
MichaelFu512 May 10, 2024
15b89ff
re-add back nlp-primitives
MichaelFu512 May 10, 2024
96eff28
didn't work, trying to have <=3.11
MichaelFu512 May 10, 2024
16a9c37
unpin scikit-learn, add approx
MichaelFu512 May 14, 2024
bd555ec
unchange meta.yaml
MichaelFu512 May 14, 2024
d03bf5d
changed rest of the assert
MichaelFu512 May 14, 2024
7a1e540
changed the rounding
MichaelFu512 May 14, 2024
9f10869
undo numpy pin
MichaelFu512 May 14, 2024
219eda4
latest
MichaelFu512 May 14, 2024
cd722d7
new function for test partial dependence
MichaelFu512 May 14, 2024
8c79a97
fix latest dependency + conda
MichaelFu512 May 14, 2024
06ddaa0
change .keys() into list
MichaelFu512 May 14, 2024
dcc4a4b
trying abs instead of rel
MichaelFu512 May 14, 2024
02b0297
Added tests to 3.10, 3.11, fix install.md
MichaelFu512 May 14, 2024
831e6c2
standarized windows conda
MichaelFu512 May 14, 2024
44f0a93
pyyaml because of python3.10, 3.11
MichaelFu512 May 14, 2024
b7860d9
I forgot a 0 in pyyaml version
MichaelFu512 May 14, 2024
c5c5fc3
vowpalwabbit pin again wow
MichaelFu512 May 14, 2024
adc799a
unpin vowpal and remove python3.11 from lint
MichaelFu512 May 14, 2024
dcd6a41
remove pandas pin
MichaelFu512 May 14, 2024
c761ff7
pin pandas, up networkx, remove networkx pin
MichaelFu512 May 14, 2024
11120d0
unpin shap
MichaelFu512 May 14, 2024
6b8db29
shap latest
MichaelFu512 May 14, 2024
ca08c7c
unpin scipy
MichaelFu512 May 14, 2024
2218778
latest dependency
MichaelFu512 May 15, 2024
b728c15
pin scipy and shap again
MichaelFu512 May 15, 2024
df3a5dd
add more tests for python version
MichaelFu512 May 15, 2024
bacb72d
updated minimum reqs
MichaelFu512 May 16, 2024
4585cf3
dependency and min
MichaelFu512 May 16, 2024
25ff906
revert adding python 3.10-3.11 to tests
MichaelFu512 May 16, 2024
1e5d9df
Addressed comments
MichaelFu512 May 16, 2024
0e05f91
install test remove exclude
MichaelFu512 May 16, 2024
d679214
revert install_test and dependency changes
MichaelFu512 May 16, 2024
756bcb5
re-adding nlp-primitives
MichaelFu512 May 16, 2024
e02206c
nlp-primitives
MichaelFu512 May 16, 2024
03526fb
potentially fixes deps_diff
MichaelFu512 May 16, 2024
3def0d4
fix attempt 2 make_deps_diff
MichaelFu512 May 16, 2024
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30 changes: 14 additions & 16 deletions .github/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -20,27 +20,27 @@ outputs:
script: build_script.sh
requirements:
host:
- python >=3.8
- python >=3.9, <=3.11
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- pip
- setuptools ==58.0.4
- setuptools >=58.0.4
run:
- numpy >=1.22.0
- numpy >=1.22.0
- pandas >=1.5.0, <2.1.0
- dask >=2022.2.0, !=2022.10.1
- scipy >=1.5.0, <1.12.0
- scikit-learn >=1.3.0
- scikit-learn >=1.3.2
- scikit-optimize >=0.9.0
- statsmodels >=0.12.2
- colorama >=0.4.4
- cloudpickle >=1.5.0
- click>=8.0.0
- click >=8.0.0
- shap >=0.42.0, <0.45.0
- texttable >=1.6.2
- woodwork >=0.22.0
- featuretools>=1.16.0
- nlp-primitives>=2.9.0
- python >=3.8.*
- networkx >=2.6, <3.2
- featuretools >=1.16.0
- nlp-primitives >=2.9.0
- python >=3.9.*
- networkx >=2.7
- category_encoders >=2.2.2, <=2.5.1.post0
- python-graphviz >=0.13
- tomli >=2.0.1
Expand All @@ -52,8 +52,8 @@ outputs:
imports:
- evalml
requires:
- pytest ==6.0.1
- nbval ==0.9.3
- pytest ==6.2.5
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@MichaelFu512 MichaelFu512 May 9, 2024

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pytest > 7.0.0 deprecates with pytest.warns(None): causing test failures. Probably should just make a new ticket to uncap it and fix those errors.

Meanwhile pytest ==6.0.1 causes the pipeline to fail.

- nbval >=0.9.3
source_files:
- evalml/*
- pyproject.toml
Expand All @@ -77,7 +77,7 @@ outputs:
- catboost >=1.1.1
- lightgbm >=4.0.0
- lime >=0.2.0.1
- python >=3.8.*
- python >=3.9.*, <=3.11
- imbalanced-learn >=0.11.0
- sktime >=0.21.0, <0.29.0
- pmdarima >=1.8.5
Expand All @@ -86,8 +86,8 @@ outputs:
imports:
- evalml
requires:
- pytest ==6.0.1
- nbval ==0.9.3
- pytest ==6.2.5
- nbval >=0.9.3
- python-graphviz >=0.8.4
- category_encoders >=2.0.0, <=2.5.1.post0
- pytest-xdist
Expand All @@ -110,13 +110,11 @@ about:

extra:
recipe-maintainers:
- dsherry
- ParthivNaresh
- bchen1116
- chukarsten
- jeremyliweishih
- christopherbunn
- fjlanasa
- eccabay
- MichaelFu512
- ivanayx
4 changes: 2 additions & 2 deletions .github/workflows/build_conda_pkg.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,10 +15,10 @@ jobs:
build_conda_pkg:
runs-on: ubuntu-latest
steps:
- name: Set up Python 3.8
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.8
python-version: 3.9
- name: Checkout repository
uses: actions/checkout@v3
with:
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/check_conda_pkg_versions.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -14,10 +14,10 @@ jobs:
check_versions:
runs-on: ubuntu-latest
steps:
- name: Set up Python 3.8
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.8
python-version: 3.9
- name: Checkout repository
uses: actions/checkout@v3
with:
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/detect_changes.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ jobs:
- uses: actions/checkout@v3
- uses: actions/setup-python@v1
with:
python-version: '3.8.x'
python-version: '3.9.x'
- name: Install Dependencies
run: |
make installdeps-test
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/install_test.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ jobs:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest]
python_version: ["3.8", "3.9", "3.10"]
python_version: ["3.9", "3.10", "3.11"]
exclude:
- os: macos-latest
python-version: "3.8"
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/latest_dependency_checker.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ jobs:
- uses: actions/checkout@v3
- uses: actions/setup-python@v1
with:
python-version: '3.8.x'
python-version: '3.9.x'
- name: Update dependencies
id: vars
run: |
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/lint_tests.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ jobs:
runs-on: ubuntu-latest
strategy:
matrix:
python_version: ["3.9"]
python_version: ["3.9", "3.10"]
steps:
- name: Checkout repository
uses: actions/checkout@v3
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/linux_integration_tests.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ jobs:
fail-fast: false
matrix:
include:
- python_version: "3.8"
- python_version: "3.9"
command: 'git-test-integration'

steps:
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/linux_nightlies.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ jobs:
strategy:
fail-fast: false
matrix:
python_version: ['3.8', '3.9']
python_version: ['3.9']
command: ['git-test-automl', 'git-test-modelunderstanding', 'git-test-other', 'git-test-parallel', 'git-test-prophet']
steps:
- name: Set up Python ${{ matrix.python_version }}
Expand Down
10 changes: 4 additions & 6 deletions .github/workflows/linux_unit_tests_with_latest_deps.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -17,15 +17,13 @@ jobs:
include:
- python_version: "3.9"
command: 'git-test-automl'
- python_version: "3.8"
command: 'git-test-automl'
- python_version: "3.8"
- python_version: "3.9"
command: 'git-test-prophet'
- python_version: "3.8"
- python_version: "3.9"
command: 'git-test-modelunderstanding'
- python_version: "3.8"
- python_version: "3.9"
command: 'git-test-other'
- python_version: "3.8"
- python_version: "3.9"
command: 'git-test-parallel'
steps:
- name: Set up Python ${{ matrix.python_version }}
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/linux_unit_tests_with_minimum_deps.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ jobs:
strategy:
fail-fast: false
matrix:
python_version: ['3.8']
python_version: ['3.9']
command: ['git-test-automl', 'git-test-modelunderstanding', 'git-test-other', 'git-test-parallel', 'git-test-prophet']
steps:
- name: Set up Python ${{ matrix.python_version }}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ jobs:
strategy:
fail-fast: true
matrix:
python_version: ["3.8", "3.9"]
python_version: ["3.9", "3.10", "3.11"]
libraries: ["core"]
steps:
- name: Set up python ${{ matrix.python_version }}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ jobs:
strategy:
fail-fast: true
matrix:
python_version: ["3.8", "3.9"]
python_version: ["3.9", "3.10", "3.11"]
libraries: ["core"]
steps:
- name: Set up python ${{ matrix.python_version }}
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/windows_nightlies.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ jobs:
strategy:
fail-fast: false
matrix:
python_version: ['3.8']
python_version: ['3.9', '3.10', '3.11']
command: ['git-test-automl', 'git-test-modelunderstanding', 'git-test-other', 'git-test-parallel', 'git-test-prophet']
steps:
- name: Download Miniconda
Expand Down Expand Up @@ -51,7 +51,7 @@ jobs:
. $env:USERPROFILE\Miniconda3\shell\condabin\conda-hook.ps1
conda activate curr_py
conda config --add channels conda-forge
conda install -q -y -c conda-forge python-graphviz graphviz
conda install -q -y -c conda-forge python-graphviz graphviz=9.0.0 pango=1.52.2
- name: Install numba (for shap)
run: |
. $env:USERPROFILE\Miniconda3\shell\condabin\conda-hook.ps1
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/windows_unit_tests.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ jobs:
strategy:
fail-fast: false
matrix:
python_version: ['3.8']
python_version: ['3.9']
command: ['git-test-automl', 'git-test-modelunderstanding', 'git-test-other', 'git-test-parallel', 'git-test-prophet']
steps:
- name: Download Miniconda
Expand Down Expand Up @@ -53,7 +53,7 @@ jobs:
. $env:USERPROFILE\Miniconda3\shell\condabin\conda-hook.ps1
conda activate curr_py
conda config --add channels conda-forge
conda install -q -y -c conda-forge python-graphviz graphviz
conda install -q -y -c conda-forge python-graphviz graphviz=9.0.0 pango=1.52.2
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- name: Install numba (for shap)
run: |
. $env:USERPROFILE\Miniconda3\shell\condabin\conda-hook.ps1
Expand Down
2 changes: 1 addition & 1 deletion .readthedocs.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ version: 2
build:
os: ubuntu-22.04
tools:
python: "3.8"
python: "3.9"
apt_packages:
- graphviz

Expand Down
4 changes: 2 additions & 2 deletions contributing.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ We currently utilize GitHub Issues as our project management tool for EvalML. Pl


#### 1. Clone repo
The code is hosted on GitHub, so you will need to use Git to clone the project and make changes to the codebase. Once you have obtained a copy of the code, you should create a development environment that is separate from your existing Python environment so that you can make and test changes without compromising your own work environment. Additionally, you must make sure that the version of Python you use is at least 3.8. Using `conda` you can use `conda create -n evalml python=3.8` and `conda activate evalml` before the following steps.
The code is hosted on GitHub, so you will need to use Git to clone the project and make changes to the codebase. Once you have obtained a copy of the code, you should create a development environment that is separate from your existing Python environment so that you can make and test changes without compromising your own work environment. Additionally, you must make sure that the version of Python you use is at least 3.9. Using `conda` you can use `conda create -n evalml python=3.9` and `conda activate evalml` before the following steps.
* clone with `git clone https://github.com/alteryx/evalml.git`
* install in edit mode with:
```bash
Expand All @@ -23,7 +23,7 @@ The code is hosted on GitHub, so you will need to use Git to clone the project a

Note that if you're on Mac, there are a few extra steps you'll want to keep track of.
* In order to run on Mac, [LightGBM requires the OpenMP library to be installed](https://evalml.alteryx.com/en/stable/install.html#Mac), which can be done with HomeBrew by running `brew install libomp`
* We've seen some installs get the following warning when importing evalml: "UserWarning: Could not import the lzma module. Your installed Python is incomplete. Attempting to use lzma compression will result in a RuntimeError". [A known workaround](https://stackoverflow.com/a/61531555/841003) is to run `brew reinstall readline xz` before installing the python version you're using via pyenv. If you've already installed a python version in pyenv, consider deleting it and reinstalling. v3.8.2 is known to work.
* We've seen some installs get the following warning when importing evalml: "UserWarning: Could not import the lzma module. Your installed Python is incomplete. Attempting to use lzma compression will result in a RuntimeError". [A known workaround](https://stackoverflow.com/a/61531555/841003) is to run `brew reinstall readline xz` before installing the python version you're using via pyenv. If you've already installed a python version in pyenv, consider deleting it and reinstalling. v3.9.2 is known to work.

#### 2. Implement your Pull Request

Expand Down
4 changes: 2 additions & 2 deletions core-requirements.txt
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
numpy>=1.21.0
pandas>=1.5.0, <2.1.0
scipy>=1.5.0, <1.12.0
scikit-learn>=1.3.0
scikit-learn>=1.3.2
scikit-optimize>=0.9.0
pyzmq>=20.0.0
colorama>=0.4.4
Expand All @@ -14,4 +14,4 @@ woodwork>= 0.21.1
dask>=2022.2.0, !=2022.10.1
nlp-primitives>=2.9.0
featuretools>=1.16.0
networkx>=2.6, <3.2
networkx>=2.7
10 changes: 5 additions & 5 deletions docs/notebook_version_standardizer.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ def _get_python_version(notebook):
return version


def _standardize_python_version(notebook, desired_version="3.8.6"):
def _standardize_python_version(notebook, desired_version="3.9.6"):
with open(notebook, "r") as f:
source = json.load(f)
source["metadata"]["language_info"]["version"] = desired_version
Expand All @@ -32,7 +32,7 @@ def _get_ipython_notebooks(docs_source):
return notebooks


def _get_notebooks_with_different_versions(notebooks, desired_version="3.8.6"):
def _get_notebooks_with_different_versions(notebooks, desired_version="3.9.6"):
different_versions = []
for notebook in notebooks:
version = _get_python_version(notebook)
Expand All @@ -41,7 +41,7 @@ def _get_notebooks_with_different_versions(notebooks, desired_version="3.8.6"):
return different_versions


def _standardize_versions(notebooks, desired_version="3.8.6"):
def _standardize_versions(notebooks, desired_version="3.9.6"):
for notebook in notebooks:
_standardize_python_version(notebook, desired_version)

Expand Down Expand Up @@ -115,7 +115,7 @@ def cli():
@cli.command()
@click.option(
"--desired-version",
default="3.8.6",
default="3.9.6",
help="python version that all notebooks should match",
)
def check_versions(desired_version):
Expand All @@ -136,7 +136,7 @@ def check_versions(desired_version):
@cli.command()
@click.option(
"--desired-version",
default="3.8.6",
default="3.9.6",
help="python version that all notebooks should match",
)
def standardize(desired_version):
Expand Down
2 changes: 1 addition & 1 deletion docs/source/demos/cost_benefit_matrix.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -284,7 +284,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.6"
"version": "3.9.6"
}
},
"nbformat": 4,
Expand Down
2 changes: 1 addition & 1 deletion docs/source/demos/fraud.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -305,7 +305,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.6"
"version": "3.9.6"
}
},
"nbformat": 4,
Expand Down
2 changes: 1 addition & 1 deletion docs/source/demos/lead_scoring.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -356,7 +356,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.6"
"version": "3.9.6"
}
},
"nbformat": 4,
Expand Down
2 changes: 1 addition & 1 deletion docs/source/demos/text_input.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -467,7 +467,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.6"
"version": "3.9.6"
}
},
"nbformat": 4,
Expand Down
2 changes: 1 addition & 1 deletion docs/source/index.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -101,7 +101,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.6"
"version": "3.9.6"
}
},
"nbformat": 4,
Expand Down
5 changes: 4 additions & 1 deletion docs/source/install.md
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ kernelspec:

# Install

EvalML is available for Python 3.8 and 3.9. It can be installed from [pypi](https://pypi.org/project/evalml/), [conda-forge](https://anaconda.org/conda-forge/evalml), or from [source](https://github.com/alteryx/evalml).
EvalML is available for Python 3.9 - 3.11. It can be installed from [pypi](https://pypi.org/project/evalml/), [conda-forge](https://anaconda.org/conda-forge/evalml), or from [source](https://github.com/alteryx/evalml).

To install EvalML on your platform, run one of the following commands:

Expand Down Expand Up @@ -110,6 +110,9 @@ If you are using `pip` to install EvalML on Windows, it is recommended you first

The [XGBoost](https://pypi.org/project/xgboost/) library may not be pip-installable in some Windows environments. If you are encountering installation issues, please try installing XGBoost from [Github](https://xgboost.readthedocs.io/en/latest/build.html) before installing EvalML or install evalml with conda.

Note: there are two graphviz, `python-graphviz` and `graphviz`. If you run into issues, ensure that `python-graphviz` version is >= 0.20.3. If there are still
issues related to `graphviz`, you can try `conda install -c conda-forge graphviz` where `graphviz` version >= 9.0.0

## Mac Additional Requirements & Troubleshooting

In order to run on Mac, [LightGBM](https://pypi.org/project/lightgbm/) requires the `OpenMP` library to be installed, which can be done with [HomeBrew](https://brew.sh/) by running:
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