v0.5.4

What's Changed

• fix(seacr-peak-calling): Corrects issues encountered when running seacr by @alsmith151 in #203
• fix pileup for seacr by @CChahrour in #204
• Fix seacr by @CChahrour in #205

Full Changelog: v0.5.3...v0.5.4

v0.5.3

What's Changed

• Fix(docs) correct install instructions by @alsmith151 in #201
• feat(pipeline): Added -s/--scale-resources option to allow for scaling resources (memory and time) by @alsmith151 in #202

Full Changelog: v0.5.2...v0.5.3

v0.5.2

What's Changed

• fix: ensure pipeline starts in fully resolved directory by @alsmith151 in #184
• feat: Reinstate snp pipeline by @alsmith151 in #185
• fix: corrects scaling of bigwigs using csaw like method by @alsmith151 in #188
• feat: seqnado-design will use the symlink name rather than the resolved path by @alsmith151 in #189
• fix: heatmaps always created and peak files absent by @alsmith151 in #183
• Fix macs output naming by @alsmith151 in #186
• Fix se with inputs by @CChahrour in #190
• Develop by @CChahrour in #192
• Develop by @CChahrour in #193
• Develop by @CChahrour in #194
• Develop by @CChahrour in #196
• Merge faster tests by @CChahrour in #198
• Merge develop with faster tests by @CChahrour in #199

Full Changelog: v0.5.1...v0.5.2

v0.5.1

What's Changed

• Add Codecov for coverage reports by @alsmith151 in #176
• Update pileup_method and peak_calling_method to be optional by @alsmith151 in #177
• Feat increase setup verbosity by @alsmith151 in #180
• Refactor name_control assignment in DesignIP class by @alsmith151 in #181
• Refactor design. by @alsmith151 in #182

Full Changelog: v0.5.0...v0.5.1

v0.5.0

What's Changed

• feat: Refactor of design and add spike-in support by @alsmith151 in #157
• fix: correct bugs found on interacting with slurm scheduler by @alsmith151 in #158
• Fix add library complexity by @CChahrour in #159
• Fix add library complexity by @alsmith151 in #161
• fix library complexity by @CChahrour in #162
• update python version for precommit by @CChahrour in #163
• Feat add transcript counting by @CChahrour in #167
• moved macs format to config by @CChahrour in #169
• fix: no such file or directory error when running on the cluster by @alsmith151 in #171
• fix: update make_ucsc_hub script to enable grouping by scaling by @alsmith151 in #172
• fix(docs): wrong python version used for building docs by @alsmith151 in #173
• fix(docs): update docs for new snakemake version by @alsmith151 in #174
• Feat parameterise quarto by @alsmith151 in #170
• Feat add seacr by @alsmith151 in #160

Full Changelog: v0.4.3...v0.5.0

v0.4.3

What's Changed

• update snakemake version by @CChahrour in #147

Full Changelog: v0.4.2...v0.4.3

v0.4.2

What's Changed

• fix hub and edit docs by @CChahrour in #142
• feat(chip and atac): Option to generate merged peak calls if "merge" key is present in design by @alsmith151 in #134
• fastqscreen added and debug chip-rx by @CChahrour in #146

Full Changelog: v0.4.1...v0.4.2

v0.4.1

What's Changed

• fix: bug fixes for conda release by @CChahrour in #139

Full Changelog: v0.4.0...v0.4.1

v0.4.0

What's Changed

• fix: chip input issue by @CChahrour in #136

Full Changelog: v0.3.9...v0.4.0

v0.3.9

What's Changed

• Develop by @CChahrour in #130

Full Changelog: v0.3.8...v0.3.9