Code

Develop#193

Code

Merged

CChahrour merged 31 commits intomasteralsmith151/SeqNado:masterfrom developalsmith151/SeqNado:developCopy head branch name to clipboardMay 28, 2024

+8-6

Commits

Commits on Apr 26, 2024

• Refactor HeatmapFiles class to include make_heatmaps property in design.py

  alsmith151

  committed
  2e2f122

  Copy full SHA for 2e2f122

• Refactor NonRNAOutput class in design.py to remove computed_field decorator

  alsmith151

  committed
  efa0f0c

  Copy full SHA for efa0f0c

• fix: correct query function to provide both the ip and control if requested

  alsmith151

  committed
  65bc64c

  Copy full SHA for 65bc64c

• Refactor control lambda function in peak_call_chip.smk to allow null control files

  alsmith151

  committed
  6036f76

  Copy full SHA for 6036f76

• Refactor query function in DesignIP class to return IPExperiment object

  alsmith151

  committed
  686825c

  Copy full SHA for 686825c

Commits on May 17, 2024

• Refactor FastqFile model to handle resolved and absolute paths

  alsmith151

  committed
  fcf7bca

  Copy full SHA for fcf7bca

Commits on May 19, 2024

• Refactor peak_call_grouped.smk to add runtime and mem resources for lanceotron_no_input_consensus rule

  alsmith151

  committed
  b7e4006

  Copy full SHA for b7e4006

• feat: Refactor pileup_norm.smk to use tile instead of tiles

  Show description for 47a596d
  alsmith151

  committed
  47a596d

  Copy full SHA for 47a596d

Commits on May 23, 2024

• Merge branch 'fix-csaw-norm' into experimental

  alsmith151

  committed
  69e21ce

  Copy full SHA for 69e21ce

• Merge branch 'fix-increase-grouped-peak-call-mem' into experimental

  alsmith151

  committed
  4b4b6ed

  Copy full SHA for 4b4b6ed

• Merge branch 'fix-heatmaps-always-created' into experimental

  alsmith151

  committed
  1fbe50c

  Copy full SHA for 1fbe50c

Commits on May 28, 2024

• fix typo design

  CChahrour

  committed
  024b97a

  Copy full SHA for 024b97a

• fix tests fastq path

  CChahrour

  committed
  9338a77

  Copy full SHA for 9338a77

• fix merge in design

  CChahrour

  committed
  7397902

  Copy full SHA for 7397902

• Merge branch 'develop' into experimental

  CChahrour

  committed
  81c6e2b

  Copy full SHA for 81c6e2b

• Merge pull request #191 from alsmith151/experimental

  Show description for b22ed22
  CChahrour

  authored
  b22ed22

  Copy full SHA for b22ed22

• fix config

  CChahrour

  committed
  f5df8c3

  Copy full SHA for f5df8c3

• Merge branch 'develop' of https://github.com/alsmith151/SeqNado into develop

  CChahrour

  committed
  e57a26e

  Copy full SHA for e57a26e

• reinstate snp into design

  CChahrour

  committed
  902cdfd

  Copy full SHA for 902cdfd

• revert peaks and design

  CChahrour

  committed
  f6aad2d

  Copy full SHA for f6aad2d

• fixed typo from merge peak calls

  CChahrour

  committed
  4c03a07

  Copy full SHA for 4c03a07

• simplify tests

  CChahrour

  committed
  e63deac

  Copy full SHA for e63deac

• update test order

  CChahrour

  committed
  a808bb1

  Copy full SHA for a808bb1

• correct test order

  CChahrour

  committed
  c644e1e

  Copy full SHA for c644e1e

• revert test order

  CChahrour

  committed
  45b21a8

  Copy full SHA for 45b21a8

• split tests

  CChahrour

  committed
  cb66d35

  Copy full SHA for cb66d35

• increase cores for tests

  CChahrour

  committed
  90c902e

  Copy full SHA for 90c902e

• revert single test

  CChahrour

  committed
  00e774c

  Copy full SHA for 00e774c

• merge

  CChahrour

  committed
  74965c0

  Copy full SHA for 74965c0

• merge develop to master

  CChahrour

  committed
  5732241

  Copy full SHA for 5732241

• Merge branch 'master' into develop

  CChahrour

  authored
  a0cd8e3

  Copy full SHA for a0cd8e3