Code

Feat increase setup verbosity#180

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alsmith151 merged 20 commits intomasteralsmith151/SeqNado:masterfrom feat-increase-setup-verbosityalsmith151/SeqNado:feat-increase-setup-verbosityCopy head branch name to clipboardApr 9, 2024

+149-36

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Commits on Apr 8, 2024

• Refactor name_control assignment in DesignIP class

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Commits on Apr 9, 2024

• Update prefix for peak files in PeakCallingFiles class

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  0634033

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• Add FAQ entry for merging multiple samples into a single sample

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• updated cli:

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• Fix symlink creation for empty source paths

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• Fix symlink creation for empty source paths

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  3f6a6d8

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• Update design.py with metadata validation

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• Update design.py with metadata validation

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  b0f90c4

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• fix: correct metadata validation

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• Merge branch 'master' into feat-enable-merging-pileups-and-consensus-peak-calls

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• Add merge column to design file for chip assay

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• Merge branch 'feat-enable-merging-pileups-and-consensus-peak-calls' into feat-increase-setup-verbosity

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• Update scale_method to "grouped" in Output class

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• Refactor alignment_post_processing.smk to use get_sample_names instead of get_sample_group

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• Update peak_calling_method to "lanceotron" in NonRNAOutput class

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• Update scale_method to "merged" in Output class

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• Added lanceotron params

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• Add container definition for lanceotron_no_input_consensus rule

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• Refactor logging verbosity in cli_pipeline function

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• Merge branch 'fix-missing-control-files' into feat-increase-setup-verbosity

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