Code

fix: chip input issue#136

Code

Merged

CChahrour merged 24 commits intomasteralsmith151/SeqNado:masterfrom developalsmith151/SeqNado:developCopy head branch name to clipboardFeb 7, 2024

+127-67

Commits

Commits on Jan 24, 2024

• Fix slurm preset (#118)

  Show description for 905046e
  CChahrour

  authored
  905046e

  Copy full SHA for 905046e

Commits on Jan 25, 2024

• Delete setup.cfg file

  alsmith151

  committed
  1a637c1

  Copy full SHA for 1a637c1

• fix: split peak call rules

  alsmith151

  committed
  ce2a8a5

  Copy full SHA for ce2a8a5

• tests: added all peak call methods to atac test

  alsmith151

  committed
  761fe04

  Copy full SHA for 761fe04

• Update output file paths in

  Show description for 1567b04
  alsmith151

  committed
  1567b04

  Copy full SHA for 1567b04

• Update file paths in hub.smk

  alsmith151

  committed
  f6b5cb3

  Copy full SHA for f6b5cb3

• fix: updated wildcards for bigBed files

  alsmith151

  committed
  2ad12a7

  Copy full SHA for 2ad12a7

• Refactor test_seqnado_config_creation function and

  Show description for f2fea5b
  alsmith151

  committed
  f2fea5b

  Copy full SHA for f2fea5b

• Update config file for chip sequencing

  alsmith151

  committed
  10a5de2

  Copy full SHA for 10a5de2

• fix: seqnado-design

  alsmith151

  committed
  e8b61bf

  Copy full SHA for e8b61bf

• chore: removed commented code

  alsmith151

  committed
  76b4918

  Copy full SHA for 76b4918

• Fix file path in lanceotron_no_input rule

  alsmith151

  committed
  4214dc7

  Copy full SHA for 4214dc7

• Fix metadata and experiment creation in DesignIP

  Show description for f6a4774
  alsmith151

  committed
  f6a4774

  Copy full SHA for f6a4774

• Fix symlink_files function to handle both paired

  Show description for f8750fc
  alsmith151

  committed
  f8750fc

  Copy full SHA for f8750fc

• Add log and wrapper for fastqc_raw_single rule

  alsmith151

  committed
  2979457

  Copy full SHA for 2979457

• update config if ucsc is null

  CChahrour

  committed
  abee85a

  Copy full SHA for abee85a

Commits on Jan 26, 2024

• Fix config (#119)

  Show description for 1a5f082
  CChahrour

  authored
  1a5f082

  Copy full SHA for 1a5f082

Commits on Jan 29, 2024

• add entrypoint and chmod profile (#122)

  CChahrour

  authored
  1b16b5f

  Copy full SHA for 1b16b5f

Commits on Feb 3, 2024

• Feature add config rerun (#126)

  Show description for 3b6defa
  CChahrour

  authored
  3b6defa

  Copy full SHA for 3b6defa

• move sigularity fix to faq in docs (#127)

  CChahrour

  authored
  a66e207

  Copy full SHA for a66e207

• Merge branch 'master' into develop

  CChahrour

  authored
  4407145

  Copy full SHA for 4407145

Commits on Feb 5, 2024

• feat(pipeline): handle failed peak calls (#131)

  Show description for eb5f39a
  alsmith151

  authored
  eb5f39a

  Copy full SHA for eb5f39a

• fix(pipeline): inputs not used for peak call (#132)

  Show description for 1f2d363
  

  alsmith151

  and

  CChahrour

  authored
  1f2d363

  Copy full SHA for 1f2d363

Commits on Feb 7, 2024

• Fix: chip input issue (#135)

  Show description for b26c33c
  CChahrour

  authored
  b26c33c

  Copy full SHA for b26c33c