test peak callers on atac

alsmith151 · May 28, 2024 · ebde634 · ebde634
1 parent fc4bcb6
commit ebde634
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/tests/test_pipelines.py b/tests/test_pipelines.py
@@ -336,15 +336,15 @@ def config_yaml_for_testing(config_yaml, assay):
 
     if assay == "chip":
         config["pileup_method"] = ["deeptools", "homer"]
-        config["peak_calling_method"] = ["homer", "lanceotron"]
+        config["peak_calling_method"] = ["lanceotron"]
         config["library_complexity"] = False
         config["bowtie2"]["options"] = "--no-mixed --no-discordant"
     elif assay == "chip-rx":
         config["call_peaks"] = True
         config["peak_calling_method"] = ["seacr"]
     elif assay == "atac":
         config["call_peaks"] = True
-        config["peak_calling_method"] = ["macs"]
+        config["peak_calling_method"] = ["homer", "lanceotron", "macs"]
 
     with open(config_yaml, "w") as f:
         yaml.dump(config, f)