increase resources for attempts for macs

alsmith151 · Apr 24, 2024 · b3f70a7 · b3f70a7
1 parent 149f26b
commit b3f70a7
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/seqnado/workflow/rules/peak_call_chip.smk b/seqnado/workflow/rules/peak_call_chip.smk
@@ -64,7 +64,7 @@ rule macs2_with_input:
         basename=lambda wc, output: output.peaks.replace(".bed", ""),
     threads: 1
     resources:
-        mem="2GB",
+        mem=lambda wildcards, attempt: f"{2 * 2 ** (attempt)}GB",
         runtime="2h",
     log:
         "seqnado_output/logs/macs/{sample}_{treatment}.log",
@@ -87,7 +87,7 @@ rule macs2_no_input:
         basename=lambda wc, output: output.peaks.replace(".bed", ""),
     threads: 1
     resources:
-        mem="2GB",
+        mem=lambda wildcards, attempt: f"{2 * 2 ** (attempt)}GB",
         runtime="2h",
     log:
         "seqnado_output/logs/macs/{sample}_{treatment}.log",