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fix(geo_submission): update processed_data_files handling to check fo…
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…r output file names
alsmith151 committed Nov 15, 2024
1 parent 2fb24f0 commit 8afff39
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion seqnado/workflow/rules/geo_submission.smk
Original file line number Diff line number Diff line change
@@ -39,7 +39,9 @@ def get_symlinked_files(wc: Any = None) -> List[str]:



if processed_files := geo_files.processed_data_files['output_file_name'].tolist():
processed_files = geo_files.processed_data_files['output_file_name']

if processed_files.any():
processed_files = [outdir / fn for fn in processed_files]
else:
processed_files = []

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