feat: added snakemake_design to define_output_files

alsmith151 · Feb 6, 2024 · 84ea7bf · 84ea7bf
1 parent 94d7877
commit 84ea7bf
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Showing 3 changed files with 4 additions and 45 deletions.
diff --git a/seqnado/workflow/snakefile_consensus_peaks b/seqnado/workflow/snakefile_consensus_peaks
diff --git a/seqnado/workflow/snakefile_rna b/seqnado/workflow/snakefile_rna
@@ -59,7 +59,7 @@ include: "rules/heatmap.smk"
 
 # Define output files
 ANALYSIS_OUTPUT = utils.define_output_files(
-    sample_names=SAMPLE_NAMES, assay=ASSAY, can_run_deseq2=CAN_RUN_DESEQ2, project_name=PROJECT_NAME,  **config
+    snakemake_design=DESIGN, sample_names=SAMPLE_NAMES, assay=ASSAY, can_run_deseq2=CAN_RUN_DESEQ2, project_name=PROJECT_NAME,  **config
 )
 
 rule all:

diff --git a/seqnado/workflow/snakefile_snp b/seqnado/workflow/snakefile_snp
@@ -41,7 +41,8 @@ include: "rules/hub.smk"
 include: "rules/qc.smk"
 include: "rules/variant.smk"
 
-ANALYSIS_OUTPUT = utils.define_output_files(sample_names=SAMPLE_NAMES,
+ANALYSIS_OUTPUT = utils.define_output_files(snakemake_design=DESIGN,
+                                            sample_names=SAMPLE_NAMES,
                                             assay=ASSAY,
                                             **config)
 
@@ -69,4 +70,4 @@ onerror:
     shutil.copyfile(log, log_out)
     print(
         f"An error occurred. Please check the log file {log_out} for more information."
-    )
+    )