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Refactor test_pipelines.yml for lazy loading of singularity containers
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alsmith151 committed Jul 25, 2024
1 parent 013524a commit 5a449e5
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4 changes: 0 additions & 4 deletions .github/workflows/test_pipelines.yml
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,6 @@ on: [push]

jobs:
Set-Up:
outputs:
containers: ${{ steps.singularity-containers-artifact.outputs.artifact-id }}
if: github.event_name == 'pull_request' || github.event_name == 'push'
runs-on: ubuntu-latest
steps:
Expand Down Expand Up @@ -75,8 +73,6 @@ jobs:
matrix:
test: ["config", "design", "pipeline"]
assay: ["atac", "chip-rx", "chip", "rna-rx", "rna", "snp"]
env:
containers: ${{needs.Set-UP.outputs.containers}}
steps:
- uses: actions/checkout@v3
- name: Cache dependencies
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