Refactor dplyr select and setNames in deseq2.qmd.jinja to use sample_…

…info.sample_name instead of sample_info.sample
alsmith151 · Apr 21, 2024 · 2fa2a30 · 2fa2a30
1 parent a1c23e4
commit 2fa2a30
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/seqnado/workflow/config/deseq2.qmd.jinja b/seqnado/workflow/config/deseq2.qmd.jinja
@@ -116,7 +116,7 @@ if (has_spikein) {
 
   # Output size factors
   size_factors <- colData(dds)[, "sizeFactor"]
-  names(size_factors) <- colData(dds)[, "sample"]
+  names(size_factors) <- colData(dds)[, "sample_name"]
   sf <- toJSON(size_factors)
   writeLines(sf, params$size_factors_out)