Merge pull request #1314 from alliance-genome/main

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alliance-genome · May 2, 2024 · 2a6c9a4 · 2a6c9a4
2 parents be79cb9 + df00b0a
commit 2a6c9a4
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Showing 3 changed files with 11 additions and 1 deletion.
diff --git a/Makefile b/Makefile
@@ -32,6 +32,15 @@ test-alb-deploy:
 prod-alb-deploy:
 	npx aws-cdk deploy prod-alb-stack
 
+stage-ui-deploy:
+	npx aws-cdk deploy agr-ui-stage
+
+test-ui-deploy:
+	npx aws-cdk deploy agr-ui-test
+
+prod-ui-deploy:
+	npx aws-cdk deploy agr-ui-production
+
 uirun:
 	npm start
 

diff --git a/src/components/orthology/orthologyJBrowseLinkPanel.js b/src/components/orthology/orthologyJBrowseLinkPanel.js
@@ -15,7 +15,7 @@ const geneLocationIsInvalid = (geneLocation) => {
 
 const OrthologyJBrowseLinkPanel = ({geneLocation, taxonid}) => {
   return (
-    geneLocationIsInvalid(geneLocation) ? null :
+    (geneLocationIsInvalid(geneLocation) || taxonid === 'NCBITaxon:2697049') ? null :
     <div id='orthologyJBrowseLinkPanel'>
         <span>Links to orthology data in JBrowse by filter level: </span>
 	<OrthologyJBrowseLink

diff --git a/src/constants.js b/src/constants.js
@@ -409,6 +409,7 @@ export const SPECIES = [
     jBrowseurltemplate: 'tracks/All Genes/{refseq}/trackData.jsonz',
     jBrowsefastaurl: 'https://s3.amazonaws.com/agrjbrowse/fasta/GCF_000001405.40_GRCh38.p14_genomic.fna.gz',
     jBrowsetracks: '_all_genes',
+    jBrowseOrthologyTracks:'',
     suppressFlatten: true,
     vertebrate: false,
     enableSingleCellExpressionAtlasLink: false,