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Merge pull request #207 from alliance-genome/Model-updates-May-16-2023
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Model updates may 16 2023
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@chris-grove
chris-grove authored May 17, 2023
2 parents 862cff5 + 8d67c19 commit 7b1edea
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288 changes: 13 additions & 275 deletions generated/jsonschema/allianceModel.schema.json
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Original file line number Diff line number Diff line change
Expand Up @@ -1197,13 +1197,6 @@
},
"type": "array"
},
"allele_molecular_mutations": {
"description": "Molecular mutations of a given allele",
"items": {
"$ref": "#/$defs/AlleleMolecularMutationSlotAnnotation"
},
"type": "array"
},
"allele_mutation_types": {
"description": "Mutation types for a given allele",
"items": {
Expand All @@ -1218,13 +1211,6 @@
},
"type": "array"
},
"allele_notes": {
"description": "Notes for a given allele",
"items": {
"$ref": "#/$defs/AlleleNoteSlotAnnotation"
},
"type": "array"
},
"allele_origin_associations": {
"items": {
"$ref": "#/$defs/AlleleOriginAssociation"
Expand Down Expand Up @@ -1347,6 +1333,13 @@
},
"type": "array"
},
"related_notes": {
"description": "Holds between an object and a list of related Note objects.",
"items": {
"$ref": "#/$defs/Note"
},
"type": "array"
},
"taxon": {
"description": "The taxon from which the biological entity derives.",
"type": "string"
Expand Down Expand Up @@ -1835,12 +1828,6 @@
},
"type": "array"
},
"allele_molecular_mutation_dtos": {
"items": {
"$ref": "#/$defs/AlleleMolecularMutationSlotAnnotationDTO"
},
"type": "array"
},
"allele_mutation_type_dtos": {
"items": {
"$ref": "#/$defs/AlleleMutationTypeSlotAnnotationDTO"
Expand All @@ -1853,12 +1840,6 @@
},
"type": "array"
},
"allele_note_dtos": {
"items": {
"$ref": "#/$defs/AlleleNoteSlotAnnotationDTO"
},
"type": "array"
},
"allele_secondary_id_dtos": {
"items": {
"$ref": "#/$defs/SecondaryIdSlotAnnotationDTO"
Expand Down Expand Up @@ -1943,6 +1924,12 @@
"description": "The curie of the laboratory of origin for the entity.",
"type": "string"
},
"note_dtos": {
"items": {
"$ref": "#/$defs/NoteDTO"
},
"type": "array"
},
"obsolete": {
"description": "Entity is no longer current.",
"type": "boolean"
Expand Down Expand Up @@ -3357,134 +3344,6 @@
"title": "AlleleInheritanceModeSlotAnnotationDTO",
"type": "object"
},
"AlleleMolecularMutationSlotAnnotation": {
"additionalProperties": false,
"description": "",
"properties": {
"created_by": {
"description": "The individual that created the entity.",
"type": "string"
},
"date_created": {
"description": "The date on which an entity was created. This can be applied to nodes or edges.",
"format": "date-time",
"type": "string"
},
"date_updated": {
"description": "Date on which an entity was last modified.",
"format": "date-time",
"type": "string"
},
"db_date_created": {
"description": "The date on which an entity was created in the Alliance database. This is disinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).",
"format": "date-time",
"type": "string"
},
"db_date_updated": {
"description": "Date on which an entity was last modified in the Alliance database. This is disinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.",
"format": "date-time",
"type": "string"
},
"evidence": {
"description": "",
"items": {
"type": "string"
},
"type": "array"
},
"internal": {
"description": "Classifies the entity as private (for internal use) or not (for public use).",
"type": "boolean"
},
"molecular_mutations": {
"description": "Description of the DNA changes if precise genomic location unknown",
"items": {
"type": "string"
},
"type": "array"
},
"obsolete": {
"description": "Entity is no longer current.",
"type": "boolean"
},
"single_allele": {
"type": "string"
},
"updated_by": {
"description": "The individual that last modified the entity.",
"type": "string"
}
},
"required": [
"single_allele",
"molecular_mutations",
"internal"
],
"title": "AlleleMolecularMutationSlotAnnotation",
"type": "object"
},
"AlleleMolecularMutationSlotAnnotationDTO": {
"additionalProperties": false,
"description": "",
"properties": {
"created_by_curie": {
"description": "Curie of the Person object representing the individual that created the entity",
"type": "string"
},
"date_created": {
"description": "The date on which an entity was created. This can be applied to nodes or edges.",
"format": "date-time",
"type": "string"
},
"date_updated": {
"description": "Date on which an entity was last modified.",
"format": "date-time",
"type": "string"
},
"db_date_created": {
"description": "The date on which an entity was created in the Alliance database. This is disinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).",
"format": "date-time",
"type": "string"
},
"db_date_updated": {
"description": "Date on which an entity was last modified in the Alliance database. This is disinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.",
"format": "date-time",
"type": "string"
},
"evidence_curies": {
"description": "Curies of InformationContentEntity objects given as evidence",
"items": {
"type": "string"
},
"type": "array"
},
"internal": {
"description": "Classifies the entity as private (for internal use) or not (for public use).",
"type": "boolean"
},
"molecular_mutation_names": {
"description": "Name of the VocabularyTerm describing the molecular mutation",
"items": {
"type": "string"
},
"type": "array"
},
"obsolete": {
"description": "Entity is no longer current.",
"type": "boolean"
},
"updated_by_curie": {
"description": "Curie of the Person object representing the individual that updated the entity",
"type": "string"
}
},
"required": [
"molecular_mutation_names",
"internal"
],
"title": "AlleleMolecularMutationSlotAnnotationDTO",
"type": "object"
},
"AlleleMutationTypeSlotAnnotation": {
"additionalProperties": false,
"description": "",
Expand Down Expand Up @@ -3734,127 +3593,6 @@
"title": "AlleleNomenclatureEventSlotAnnotationDTO",
"type": "object"
},
"AlleleNoteSlotAnnotation": {
"additionalProperties": false,
"description": "",
"properties": {
"created_by": {
"description": "The individual that created the entity.",
"type": "string"
},
"date_created": {
"description": "The date on which an entity was created. This can be applied to nodes or edges.",
"format": "date-time",
"type": "string"
},
"date_updated": {
"description": "Date on which an entity was last modified.",
"format": "date-time",
"type": "string"
},
"db_date_created": {
"description": "The date on which an entity was created in the Alliance database. This is disinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).",
"format": "date-time",
"type": "string"
},
"db_date_updated": {
"description": "Date on which an entity was last modified in the Alliance database. This is disinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.",
"format": "date-time",
"type": "string"
},
"evidence": {
"description": "",
"items": {
"type": "string"
},
"type": "array"
},
"internal": {
"description": "Classifies the entity as private (for internal use) or not (for public use).",
"type": "boolean"
},
"obsolete": {
"description": "Entity is no longer current.",
"type": "boolean"
},
"related_note": {
"$ref": "#/$defs/Note",
"description": "Holds between an object and a Note object."
},
"single_allele": {
"type": "string"
},
"updated_by": {
"description": "The individual that last modified the entity.",
"type": "string"
}
},
"required": [
"single_allele",
"related_note",
"internal"
],
"title": "AlleleNoteSlotAnnotation",
"type": "object"
},
"AlleleNoteSlotAnnotationDTO": {
"additionalProperties": false,
"description": "",
"properties": {
"created_by_curie": {
"description": "Curie of the Person object representing the individual that created the entity",
"type": "string"
},
"date_created": {
"description": "The date on which an entity was created. This can be applied to nodes or edges.",
"format": "date-time",
"type": "string"
},
"date_updated": {
"description": "Date on which an entity was last modified.",
"format": "date-time",
"type": "string"
},
"db_date_created": {
"description": "The date on which an entity was created in the Alliance database. This is disinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).",
"format": "date-time",
"type": "string"
},
"db_date_updated": {
"description": "Date on which an entity was last modified in the Alliance database. This is disinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.",
"format": "date-time",
"type": "string"
},
"evidence_curies": {
"description": "Curies of InformationContentEntity objects given as evidence",
"items": {
"type": "string"
},
"type": "array"
},
"internal": {
"description": "Classifies the entity as private (for internal use) or not (for public use).",
"type": "boolean"
},
"note_dto": {
"$ref": "#/$defs/NoteDTO"
},
"obsolete": {
"description": "Entity is no longer current.",
"type": "boolean"
},
"updated_by_curie": {
"description": "Curie of the Person object representing the individual that updated the entity",
"type": "string"
}
},
"required": [
"note_dto",
"internal"
],
"title": "AlleleNoteSlotAnnotationDTO",
"type": "object"
},
"AlleleOriginAssociation": {
"additionalProperties": false,
"description": "The relationship between an allele and the origin of the allele.",
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