π Alister Burt β£ββ π¬ Research Interests β β£ββ cryo-electron tomography - enabling in situ protein structure determination β βββ bacterial chemotaxis - how bacteria sense and respond to nutrients/toxins β£ββ π¦ Open Source Packages β β£ββ napari - n-dimensional data visualisation in Python β β£ββ blik - browse cryo-ET data and annotations in napari β β£ββ napari-animation - make animations in napari β β£ββ dynamo2m - combine dynamo and warp/relion/m β β£ββ eulerangles - fast conversion of large sets of Euler angles β βββ starfile - STAR file IO in Python β£ββ β Web Projects β βββ teamtomo.org - cryo-ET knowledge platform β£ββ ποΈ Teaching β β£ββ EMBO image processing for cryo electron microscopy β β£ββ EMBO advanced methods in bioimage analysis β β£ββ EMBO cryo-electron microscopy and 3D image processing β β£ββ Dynamo workshop - Basel, CH β β£ββ Intro to bioinformatics - UniversitΓ© Grenoble Alpes β βββ Multidisciplinary experimental methods - UniversitΓ© Grenoble Alpes βββ π¨βπ» Employer β£ββ MRC-LMB - Postdoc in David Barford's group βββ β° Previously... β£ββ CCP-EM - collaborative computational project for electron microscopy βββ Institut de Biologie Structurale - PhD student in Irina Gutsche's group β£ββ Diamond Light Source - Intern on B24 βββ CHyM - Intern Follow me on twitter @AlisterBurt
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napari/napari-animation
napari/napari-animation PublicA napari plugin for making animations
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napari/napari
napari/napari Publicnapari: a fast, interactive, multi-dimensional image viewer for python
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napari-mrcfile-reader
napari-mrcfile-reader PublicRead MRC format image files into napari using the mrcfile package from CCP-EM
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teamtomo/fidder
teamtomo/fidder PublicDetect and erase gold fiducials in cryo-EM images
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