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STAR 2.7.6a --- 2020/09/19
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@alexdobin alexdobin released this 19 Sep 19:45
· 242 commits to master since this release
2.7.6a
1a9a6fc

Major new feature:

Output multimapping chimeric alignments in BAM format using
--chimMultimapNmax N>1 --chimOutType WithinBAM --outSAMtype BAM Unsorted [and/or] SortedByCoordinate
Many thanks to Sebastian @suhrig who implemented this feature!
A more detailed description from Sebastian in PR #802.

Minor features and bug fixes:

  • Issue #1008: fixed the problem with Unmapped.out.mate? output for --soloType CB_samTagOut output.
  • PR # 1012: fixed the bug with --soloCellFiltering TopCells option.
  • Issue #786: fixed the bug causing the Different SJ motifs problem for overlapping mates.
  • Issue #945: GX/GN can be output for all --soloType, as well as for non-solo runs.
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