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STAR 2.7.5a ______ 2020/06/16
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@alexdobin alexdobin released this 16 Jun 17:38
· 274 commits to master since this release
2.7.5a
ca4c213

STAR 2.7.5a 2020/06/16

Major new features:

  • Implemented STARsolo quantification for Smart-seq with --soloType SmartSeq option.
  • Implemented --readFilesManifest option to input a list of input read files.

Minor features and bug fixes:

  • Change in STARsolo SJ output behavior: junctions are output even if reads do not match genes.
  • Fixed a bug with solo SJ output for large genomes.
  • N-characters in --soloAdapterSequence are not counted as mismatches, allowing for multiple adapters (e.g. ddSeq).
  • SJ.out.tab is sym-linked as features.tsv for Solo SJ output.
  • Issue #882: 3rd field is now optional in Solo Gene features.tsv with --soloOutFormatFeaturesGeneField3.
  • Issue #883: Patch for FreeBSD in SharedMemory and Makefile improvements.
  • Issue #902: Fixed seg-fault for STARsolo CB/UB SAM attributes output with --soloFeatures GeneFull --outSAMunmapped Within options.
  • Issue #934: Fixed a problem with annotated junctions that was causing very rare seg-faults.
  • Issue #936: Throw an error if an empty whitelist is provided to STARsolo.
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