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2.5.1a
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@alexdobin alexdobin released this 19 Jan 22:29
· 922 commits to master since this release
2.5.1a
a979f3f
  • Fixed a bug in --quantMode TranscriptomeSAM that prevented output to Aligned.toTranscriptome.out.bam of the reads mapped to the very last annotated transcript.
  • Cleaned up the code to remove compilation warnings (thanks to github.com/yhoogstrate).
  • Implemented --outSAMunmapped Within KeepPairs option to record unmapped mate adjacent to the mapped one, in case single-end alignments are allowed.
    For multi-mappers, the unmapped mate will be recored mulitple times adjacent to the mappet mate of each alignment.
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