Visualization snippets for data generated as part of the GGR project. In this gene-oriented website users can interrogate the genomic response to glucocorticoids (dex) during a 12 hours treatment time course. Currently, there are visual components for:
- [RNA-seq] Gene expression. TPMs per gene and isoforms as well as relative enrichment over non-dex conditions in log2 fold-change.
- [DNase-seq] Chromatin accessibility in Reads Per Million of sequencing reads (RPMs).
- [ChIP-seq] Transcription Factors (TFs) and chromatin marks binding profiles.
- [Hi-C] Dex responsive chromatin loops in log2 fold-change.