Releases: aitgon/vtam
Releases · aitgon/vtam
**Changes In Version 0.2.0 (May 12, 2022)**
- Addressed issues 12, 14, and 19: refactored commands merge sortreads and filter to work with zipped files (.gz and .bz2 format). * Merge and sortreads produce zipped files when zipped files are provided: issues * filter can accept compressed input: issue 19, * sortreads produce compressed output when provided with compressed inputs: issue 14, * merge produce compressed output when provided with compressed: inputs 12. - Addressed issues 15, 16, 17, 18 (improved demultiplexing with sortreads): * implemented --no_reverse option to check only on strand: issue 15, * use cutadapt v3 to search all tags pairs in parallel: issue 16, * added options --tag_to_end and --primer_to_end to search and trim for tags (issue 17) and primers (issue 18) only at the end of the strands. - Addressed issue 20: * added command random_seq to produce random samples from a dataset - Addressed issue 1: * Integrated the make_known_occurrences command to create a .tsv file with the known occurrences.
0.1.22
**Changes In Version 0.1.21 (Dec 11, 2020)**
- ENH added '--countreads' option to 'vtam pool' - ENH using OSF database for VTAM files - DOC - BUG bugs
0.1.20: - DOC
- ENH Keep separated samples from different run in pooled asv table - BUG
0.1.19: - BUG fixed filter codon stop and wrapper tests
- ENH Fixed used of LFS resulting in github fees