first pass at making a pipeline

python_pipeline.py

@@ -0,0 +1,49 @@
+# -*- coding: utf-8 -*-
+# <nbformat>3.0</nbformat>
+
+# <codecell>
+
+%pylab inline
+import numpy as np
+
+f = open('Lumi.2760.csv')
+g = f.readlines()
+f.close()
+
+h = np.empty((8,12))
+
+for i in range(8):
+    h[i] = g[i+1].split(',')[1:]
+
+imshow(h)
+colorbar()
+
+f = open('20130524 2760 1 2 3 later.txt')
+g = f.readlines()
+f.close()
+
+plate_no = 2760
+
+for idx in range(len(g)):
+    plate_str = 'Plate:\t'+str(plate_no)
+    if plate_str in g[idx]:
+        break
+print idx
+
+def get_bgal_data(data, idx):
+    start_idx = idx + 2
+    h = np.empty((8,12))
+    h[0] = data[start_idx].strip().replace('\t',' ').split(' ')[1:]
+    for i in range(1,8):
+        h[i] = data[start_idx+i].strip().replace('\t',' ').split(' ')
+    return h
+
+bgal_data = get_bgal_data(g, idx)
+
+
+imshow(bgal_data)
+colorbar()
+
+norm_data = h/(bgal_data-0.07)
+imshow(norm_data)
+