Add the ability to run on incomplete genomes #24
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Takes a several hours to run OperonMapper in this case, but all other things seems to work fine. Changes: - Change in `convert_operonmapper_to_gff3.py` and Snakefile to have an ability to read seq id from file and not to define it "manually"; - Change in `transposon.py rebuild`. Add iteration through sequences in .fna file. Actually, `transposon.py cut` already worked correctly with multiple contigs, thus, it has been relatively easy to complement `transposon.py rebuild`.
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Takes a several hours to run OperonMapper in this case, but all other things seems to work fine. Changes:
convert_operonmapper_to_gff3.pyand Snakefile to have an ability to read seq id from file and not to define it "manually";transposon.py rebuild. Add iteration through sequences in .fna file. Actually,transposon.py cutalready worked correctly with multiple contigs, thus, it has been relatively easy to complementtransposon.py rebuild.