Study title: Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis
Authors: Asimenia Gavriilidou (1), Johanna Gutleben (2), Dennis Versluis (1), Francesca Forgiarini (1), Mark W.J. van Passel (1), Colin J. Ingham (2), Hauke Smidt (1), Detmer Sipkema (1)
Affiliations:
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
- Hoekmine BV, Utrecht, The Netherlands
Correspondence: Asimenia Gavriilidou ([email protected])
This repository contains all the input files and codes used for analysis in the research article by Gavriilidou A, et al. Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis. BMC Genomics 21, 569 (2020). https://doi.org/10.1186/s12864-020-06971-7
Below is a short description of the repository structure:
Assembly_Annotation.Rmd #R Markdown file containing bash commands and information on the whole genome sequencing data processing done on a Linux server.
Functional_Profiling_Data_Analysis.Rmd #R Markdown file with all R scripts and additional information for analysing the genome annotation data.
input #Includes all input files used in the Functional Profiling Data Analysis
For any queries and additional information regarding the analysis described here: [email protected]